SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2101

Length: 579 nt

Origin of reads: Biogeco_1 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene2101
CGTCGTGACCTTGGCTGTCACTCAAACCCAACCCCGTGTTCAATACAAGGACCCCCGTCAAGCTCCGTCACAGTTGGACACGCCTTTTGGCCCACGGAAGTTGACGCGAAAGAAATCGAACCTGGGACGTGGTGCTCCGAGCCACGCTAAGATTAACTGGATTGCATATTGCGAAAGAGAGATTGCTTTTCTGTTTTCTCAGGGCCAAGACAATCCTCCATTTTGCGAAGGGGAGAGGAGGGATGGGAGACGCAGATTCTTCAAACGATGCGCTCTTGAAGGGCTTTTTAGCTGAAGTCAGCGAAGTTGAACGGTCCAACGAGGTCAACAGGATTCTTTCTTGCTTCAAGTTAAACCCCTTTGAGCATCTCAATTTGCCTTTTTCTTCATCGGTGGATGAAGTGAAGCGGCAGTATCGCAAGATATCATTATTGGTACATCCTGATAAGTGCAACCACCCACAGTCAAAAGAGGCATTTGGAGCTATAGCAAAAGCTCAAGAGCTACTATTGGATCCTCAGGAGAGGGAGTATCTTGTTACCCAGTTCAATATAGCAAAGATGAACTCAGAGCAGAGAG

Ace file of the UniGene sp_v1.1_unigene2101 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNAJ heat shock N-terminal domain-containing protein n=2 Tax=Arabidopsis RepID=D7M0T5_ARALY	-	-	1.0e-31	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	protein	-	-	2.54452e-32	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein DnaJ, N-terminal	IPR001623	-	2.54452e-32	80%
Blast2go	Heat shock protein DnaJ	IPR003095	-	2.54452e-32	80%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV01

Fln msg: Distance to subject end: 179 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 112 - 361

Fln protein: MGDADSSNDALLKGFLAEVSEVERSNEVNRILSCFKLNPFEHLNLPFSSSVDEVKRQYRKISLLVHPDKCNHPQSKEAFGAIAKAQELLLDPQEREYLVTQFNIAKMNSEQR

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACCCAACCCCGTGTTCAATACAAGGACCCCCGTCAAGCTCCGTCACAGTTGGACACGCCTTTTGGCCCACGGAAGTTGACGCGAAAGAAATCGAACCTGGGACGTGGTGCTCCGAGCCACGCTAAGATTAACTGGATTGCATATTGCGAAAGAGAGATTGCTTTTCTGTTTTCTCAGGGCCAAGACAATCCTCCATTTTGCGAAGGGGAGAGGAGGG_-_ATGGGAGACGCAGATTCTTCAAACGATGCGCTCTTGAAGGGCTTTTTAGCTGAAGTCAGCGAAGTTGAACGGTCCAACGAGGTCAACAGGATTCTTTCTTGCTTCAAGTTAAACCCCTTTGAGCATCTCAATTTGCCTTTTTCTTCATCGGTGGATGAAGTGAAGCGGCAGTATCGCAAGATATCATTATTGGTACATCCTGATAAGTGCAACCACCCACAGTCAAAAGAGGCATTTGGAGCTATAGCAAAAGCTCAAGAGCTACTATTGGATCCTCAGGAGAGGGAGTATCTTGTTACCCAGTTCAATATAGCAAAGATGAACTCAGAGCAGAGAG

Fln Alignment:

sp_v1.1_unigene2101___LNLPFSSSVDEVKRQYRKISLLVHPDKCNHPQSKEAFGAIAKAQELLLDPQER
A9NV01______________LGLEKNCSVEDVRKAYRKLSLRVHPDKNKAPGSEEAFKAVSKAFQCLSNEEMR

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
254		12		87	0.992554
255	12			87	0.992554
257	87			12	0.992554
507	75	25			1.0
508	75	12			0.975346
514		16	83		0.994512
515	83	16			0.994512
517		16	83		0.994512
518	16		83		0.994512
519	83			16	0.994512
521		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain