SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2076

Length: 1966 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2076
TGCTAGTATAGTCTTATGAATAAATGATGGCTGCAGATAGCCTTCACTATTTTTGGTGTTCCCATGTCTGTTACTGTCGTATCTTGGCGTCGCTGCATTTCTTATACAAATCCAAGCATGGCAGAACGGGCATTCTACGCTTCAATTCCAGCTGGTGCGTTCTGGCCAATTCTTGTGCTAGCCACTACTGCTGCTCTGATCGCAAGTCAAGCTATGATTTCAGCAACATTTTCATGTATCAAACAGTCAATGGCTCTTGGTTGCTTCCCCAGGCTTAAAGTCATACACACCTCAAAGCGGTTTATGGGCCAGGTCTACATTCCAATCATAAACTGGTTCCTGATGATTCTTTGCATCATTGTAGTTGCCACCTTTAAGGGCACAAACGAGATAGGAAATGCATATGGGATTTCTGAGGTGGGAGTAATGATGGTGACCACAGTGTTAGTGACTATTGTCATGCTTCTGATATGGCAAACCAACCTATTCTTGGCACTGTGTTTCCTGGTTTTCTTTCTAACCATTGAACTAACTTATTTTGTAGCTGTATTGATGAAAGTGAGTGATGGTAGTTGGCTCCCATTGGTTGTAGCCTCCTGCCTCCTTTTTGTAATGTACATCTGGAACTATGGAAGTGTCCTAAAGTATCAAAGTGAAGTTAGGATGAAAATCTCAATGGATTTGATGCTAGAGCTGGGTTCAAATCTTGGCACAGTAAGAGTTCCTGGAATTGGGTTGGTCTATAATGAACTTGTTCATGGAATTCCAGCAATATTTGGGAATTTTGTAACAAGTCTCCCAGCTATTCATTCCACCATAATATTTGTATGTATCAAGTATGTTCCAGTTCCTGTTGTGACACAAGGTGAGCGCTTTCTATTCAGACGAGTCTGTCCAAGAAACTACAACATGTTTCGCTGTATTGCAAGGTATGGTTACAAAGATGTCCGAAAGGAGAATCATCAAGCCTTCGAACAACTACTTATTGAAAGTCTTGAAAAGTTTCTCCGTAGGGAGGCTGAAGATTTCTCATTAGAGAGTGATGATCTGTATACTTCAGAATCAGAGAATGAAACAAAGGATCCTAAACTACTAGGAGAAATAAGCTGCAGCCTCGATTCCCTGGAGGCACCCCTAATGGGAAATTACAGGGGTTCAAGGAATTTCTTTGCTCCTCCAGAGTCACTACCAGAAGCTAGTACCTCATCAGGGTTGCCCACAAGTGTTGTGCCCATGGATGATCAAAGTCTTGAGTATGAGCTTTCATCCATGCATAAAGCCAAAGAATCAGGAGTTGTATATCTCTTGGGTCATGGAGATATTAGAGCTAGAAAGGATTCTTGGTTTATCAAGAAATTGGTTATTAATTACTTCTATGCTTTTTTGAGGAAAAATTGCAGAGCAGGCATTGCAACACTACGTGTTCCTCACACTAATCTTCTGCAGGTTGGCATAACTCACATGGTGTGAGATCTTGAAGCTACAGAGTCACAGACTTTAAGCTTGCCCAAAAGGATCAACAAAAGAATGCTTCTGCATAGGATGTGATGAGAGAAATGGGAGAATCTGGTGACAGAAAACACATTGAAATATAACATTGAACTGCACATTGGATTTGCATCTGCTGCTCCATAAACCATATCTAACTGTATTTGATAGGAAATCATACAGATTTTGACTTTAGGATATGGCAGTTGAGGGGAATGCAGCATTTGCTACTTGTCATATAGTGATGTTCAATTTAATTGTCTTCAGTATCTACCATTAGGCTGATGCCCCAGTTCTCCACATCTGATGATGATGCAATTGCTAGCCTGAACAACTGAAATCTATCCATACTTGAGGCTTTCTTTGGTTAAGGTTTCATGCTAGAAGTTGAAAGCAAAAGTGATATCAGTTTATTTATGTTTCGAAATTCAGGTTTTAAGCCTTGTAGTATACTTATTTCTTTGAATATTTCTTAATT

Ace file of the UniGene sp_v1.1_unigene2076

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	potassium ion transporter family protein	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	potassium transporter 5p	-	-	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	K+ potassium transporter	IPR003855	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8F8

Fln msg: your sequence is longer than subject: 469 - 250

Fln protein: MSVTVVSWRRCISYTNPSMAERAFYASIPAGAFWPILVLATTAALIASQAMISATFSCIKQSMALGCFPRLKVIHTSKRFMGQVYIPIINWFLMILCIIVVATFKGTNEIGNAYGISEVGVMMVTTVLVTIVMLLIWQTNLFLALCFLVFFLTIELTYFVAVLMKVSDGSWLPLVVASCLLFVMYIWNYGSVLKYQSEVRMKISMDLMLELGSNLGTVRVPGIGLVYNELVHGIPAIFGNFVTSLPAIHSTIIFVCIKYVPVPVVTQGERFLFRRVCPRNYNMFRCIARYGYKDVRKENHQAFEQLLIESLEKFLRREAEDFSLESDDLYTSESENETKDPKLLGEISCSLDSLEAPLMGNYRGSRNFFAPPESLPEASTSSGLPTSVVPMDDQSLEYELSSMHKAKESGVVYLLGHGDIRARKDSWFIKKLVINYFYAFLRKNCRAGIATLRVPHTNLLQVGITHMV*

Protein Length: 470

Fln nts: TGCTAGTATAGTCTTATGAATAAATGATGGCTGCAGATAGCCTTCACTATTTTTGGTGTTCCC_-_ATGTCTGTTACTGTCGTATCTTGGCGTCGCTGCATTTCTTATACAAATCCAAGCATGGCAGAACGGGCATTCTACGCTTCAATTCCAGCTGGTGCGTTCTGGCCAATTCTTGTGCTAGCCACTACTGCTGCTCTGATCGCAAGTCAAGCTATGATTTCAGCAACATTTTCATGTATCAAACAGTCAATGGCTCTTGGTTGCTTCCCCAGGCTTAAAGTCATACACACCTCAAAGCGGTTTATGGGCCAGGTCTACATTCCAATCATAAACTGGTTCCTGATGATTCTTTGCATCATTGTAGTTGCCACCTTTAAGGGCACAAACGAGATAGGAAATGCATATGGGATTTCTGAGGTGGGAGTAATGATGGTGACCACAGTGTTAGTGACTATTGTCATGCTTCTGATATGGCAAACCAACCTATTCTTGGCACTGTGTTTCCTGGTTTTCTTTCTAACCATTGAACTAACTTATTTTGTAGCTGTATTGATGAAAGTGAGTGATGGTAGTTGGCTCCCATTGGTTGTAGCCTCCTGCCTCCTTTTTGTAATGTACATCTGGAACTATGGAAGTGTCCTAAAGTATCAAAGTGAAGTTAGGATGAAAATCTCAATGGATTTGATGCTAGAGCTGGGTTCAAATCTTGGCACAGTAAGAGTTCCTGGAATTGGGTTGGTCTATAATGAACTTGTTCATGGAATTCCAGCAATATTTGGGAATTTTGTAACAAGTCTCCCAGCTATTCATTCCACCATAATATTTGTATGTATCAAGTATGTTCCAGTTCCTGTTGTGACACAAGGTGAGCGCTTTCTATTCAGACGAGTCTGTCCAAGAAACTACAACATGTTTCGCTGTATTGCAAGGTATGGTTACAAAGATGTCCGAAAGGAGAATCATCAAGCCTTCGAACAACTACTTATTGAAAGTCTTGAAAAGTTTCTCCGTAGGGAGGCTGAAGATTTCTCATTAGAGAGTGATGATCTGTATACTTCAGAATCAGAGAATGAAACAAAGGATCCTAAACTACTAGGAGAAATAAGCTGCAGCCTCGATTCCCTGGAGGCACCCCTAATGGGAAATTACAGGGGTTCAAGGAATTTCTTTGCTCCTCCAGAGTCACTACCAGAAGCTAGTACCTCATCAGGGTTGCCCACAAGTGTTGTGCCCATGGATGATCAAAGTCTTGAGTATGAGCTTTCATCCATGCATAAAGCCAAAGAATCAGGAGTTGTATATCTCTTGGGTCATGGAGATATTAGAGCTAGAAAGGATTCTTGGTTTATCAAGAAATTGGTTATTAATTACTTCTATGCTTTTTTGAGGAAAAATTGCAGAGCAGGCATTGCAACACTACGTGTTCCTCACACTAATCTTCTGCAGGTTGGCATAACTCACATGGTGTGA___GATCTTGAAGCTACAGAGTCACAGACTTTAAGCTTGCCCAAAAGGATCAACAAAAGAATGCTTCTGCATAGGATGTGATGAGAGAAATGGGAGAATCTGGTGACAGAAAACACATTGAAATATAACATTGAACTGCACATTGGATTTGCATCTGCTGCTCCATAAACCATATCTAACTGTATTTGATAGGAAATCATACAGATTTTGACTTTAGGATATGGCAGTTGAGGGGAATGCAGCATTTGCTACTTGTCATATAGTGATGTTCAATTTAATTGTCTTCAGTATCTACCATTAGGCTGATGCCCCAGTTCTCCACATCTGATGATGATGCAATTGCTAGCCTGAACAACTGAAATCTATCCATACTTGAGGCTTTCTTTGGTTAAGGTTTCATGCTAGAAGTTGAAAGCAAAAGTGATATCAGTTTATTTATGTTTCGAAATTCAGGTTTTAAGCCTTGTAGTATACTTATTTCTTTGAATATTTCTTAATT

Fln Alignment:

sp_v1.1_unigene2076___VYNELVHGIPAIFGNFVTSLPAIHSTIIFVCIKYVPVPVVTQGERFLFRRVCPRNYNMFRCIARYGYKDVRKENHQAFEQLLIESLEKFLRREAEDFSLESDDLYTSESENETKDPKLLG-EISCSLDSLEAPLMG---NYRGSRNFFAPPESLPEASTSSG--------LPTSVVPMDDQSLEYELSSMHKAKESGVVYLLGHGDIRARKDSWFIKKLVINYFYAFLRKNCRAGIATLRVPHTNLLQVGITHMV
D5A8F8______________MYTELVTGIPANFTHFVTNLPAFHQVLIFICIKSVPVPYVPPEERFLIGRVGPKEYRLYRCIVRYGYRDVHGDTDH-FEDQLILNLGEFIRSEAKHSC--SSDSYSADGRMAVIGTPVHGMESILSYETAEESIQSVNLSYLGSQTIQSIQDLIETDSPHLARRKKVRFLLPSS--PDIDPDVKDELQELFQAREAGIAFILGHSYVKAKNDSSFLKKLAINAGYNFLRKNCRGPSVALRIPHISLLEVGMVYLV

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
778	80		20		0.995493
1119		33		66	0.997452
1453	16		83		0.994512
1455			16	83	0.994512
1461	87	12			0.992554
1462	87			12	0.992554
1463		87	12		0.992554
1464			12	87	0.992554
1465		87	12		0.992554
1562	90		10		0.90298
1563	90		10		0.90298
1564			10	90	0.90298
1749		14		85	0.993533
1755		14		85	0.993533
1772		14		85	0.993533
1843		16		83	0.994512
1852			80	20	0.995493
1871		20		80	0.995493
1877			80	20	0.995493
1886		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain