SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2063

Length: 1914 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2063

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Double-stranded RNA binding protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TW99_PHYPA	-	-	1.0e-24	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	dsrna-binding protein	-	-	5.32587e-26	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	production of small RNA involved in gene silencing by RNA	GO:0070918	Biological Process	5.32587e-26	56%
Blast2go	response to hormone stimulus	GO:0009725	Biological Process	5.32587e-26	56%
Blast2go	gene silencing by miRNA	GO:0035195	Biological Process	5.32587e-26	56%
Blast2go	RNA binding	GO:0003723	Molecular Function	5.32587e-26	56%
Blast2go	protein binding	GO:0005515	Molecular Function	5.32587e-26	56%
Blast2go	nuclear body	GO:0016604	Cellular Component	5.32587e-26	56%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Double-stranded RNA-binding	IPR001159	-	5.32587e-26	56%
Blast2go	Double-stranded RNA-binding-like	IPR014720	-	5.32587e-26	56%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUQ0

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 124 aas, putative chimeric sequence, your sequence is shorter than subject: 234 - 346

Fln protein: MAERKGVANIVLPKSQLNEYTQKLSLPTPSYDFTKEGPSHNPRFRASVLVNGKRYDSKSEFLTSKEAEHDAARVALEDLNANGTTSLPNSVCEAGQWKNVLQQHAQKLKLPLPTYTCMKTGDDHSPKFISTVEVGGISCTGGIATTKKAAEMRAARRAFSVLQGQSCDYDLQGISCHRKREIELKEPSKEIQAAKPKLAKTCTESVSSDNSNLKDGMFVENQLEIHLQQEETK*

Protein Length: 235

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTCTGCTTTCTCTGTCGACGACTGGTCAACTAGTCATCATTTACCGCTATGTGTCATCCAGACAGGGACCTGGCGGGGCCTACCTATATATAGTGTTCATGGCTATGTGTGTCCTGCCTGTGTGTGCCCTAAAAAGAAAAGGACATTCTTTGAGAGGATTAGCAATATCAGCAGATCAACAGTGGACTGGCAATAAAGACTTAAATTCATAAACCCATCTCCCAAAAATTTCTATGGACTGAGAATAAGGACTTCAAACTCATAAACCCATCCTTCAGCAATCTCAGGGTTTCTGATTAAGGACTTAAAGCTCATAAACCATTCCCATCACCTCCACGGTTTCCTCTGTCCATATCCAGAGGGGGGATAGTGGACTGAGCTTTGGGAATTTACCCTCTACACTGAACCTACTACTCTGCCTACAACAGACATATCATACTGTAAATATAAATATTCATTTGAGCCCTCGAAAACAAACAAATAAGCACTATATTCCATAGCGTGCAGTGGCCGTAGCGAAGCTCCTCCCCTCGCTGGATATGCCAGCGTTTTCTACCTGATAGCGCCGAGGCCTTGAGAAAGACGCACATAACAACGTAACCCATATTGTATTTTACATCATTCGATTTTTGCCTGTAGTGTAACTGGTAATGCCTGTGCCTGTTCTGTTATGTTCTGGAATTCCAAGGAAGCGGCAACAAACAAGGAAGCGCGATATTCGCAGGTTAACCACCTTCCATATTATAATAACAAGTAGAAAAGAAAACGGGAGTATAGTTGGGCTATTTTGAATTGTAGCAAAAC_-_ATGGCTGAAAGAAAAGGTGTGGCAAACATTGTATTGCCCAAAAGCCAGTTAAATGAGTACACACAAAAATTATCCCTGCCTACACCTTCATATGATTTTACAAAAGAGGGCCCTTCACATAATCCAAGGTTCAGGGCGTCTGTTCTTGTTAATGGTAAAAGGTATGATTCTAAATCAGAATTTTTAACTAGTAAGGAGGCCGAGCATGATGCTGCACGAGTTGCTCTGGAAGACCTGAATGCCAATGGAACCACTTCTTTGCCTAATTCAGTGTGTGAGGCTGGGCAATGGAAGAATGTTCTTCAGCAGCATGCACAAAAATTGAAGCTTCCACTGCCTACTTATACTTGCATGAAAACTGGAGATGATCATTCTCCAAAATTTATCTCTACAGTGGAGGTGGGAGGAATTTCCTGCACAGGTGGTATTGCAACAACTAAAAAGGCCGCAGAAATGAGAGCTGCAAGAAGAGCTTTTTCGGTACTTCAAGGCCAATCATGTGATTATGATTTGCAAGGTATAAGCTGTCACAGGAAGAGGGAGATTGAACTCAAAGAACCCTCTAAGGAGATACAGGCTGCCAAGCCTAAGCTTGCCAAGACATGTACAGAATCAGTTAGCTCAGACAATTCTAATTTGAAGGATGGAATGTTTGTTGAGAATCAATTAGAGATACATCTACAGCAGGAGGAAACAAAATGA___AAGATGGAATGTTTGTTTAGAATCAATTAGAGATACATCTACAGCAGGAGGATACAAAATGAAAGGAAAGTGAGGACCAAGATAAGGAACGGAGAGCTTTGAACTATGCTTTGACCTTATGTGCTCACAATCAGAACTACATGGATTGGTTGTAGGTAGGGAATTCTTATTTGTTTATGACCTTTATTGAAGGTTACCATTTCTGAGTAAAATGATCTCCACTATTGTAAGGATTCCCTGTTAAACCACTCAGTGGTGATGCTCTATTCCTTATATGACTCAGGATATCGTTTGACAATTGACAAACTTTTCAGTGATTGATGATGATTAATTGACTGCTTCTTGACAACTTTATTAAGTTGCTTTATGGCCCTGTGAACG

Fln Alignment:

sp_v1.1_unigene2063___KSQLNEYTQKLSLPTPSYDFTKEGPSHNPRFRASVLVNGKRYDSKSEFLTSKEAEHDAARVALEDLNANGTTSLPNSVCEAGQWKNVLQQHAQKLKLPLPTYTCMKTGDDHSPKFISTVEVGGISCTG
A9NUQ0______________KGRLQEYTQKNSFPLPVYDTVNEGQDHIPRFKCTVTVNGARYDSPPGFNHKKPAQNAAAEAAVKKLVNQGLLPI-EEVILPKKPKNVLEDIALKKNMPPPSYKFSKEGEAHCPTFTAIVEINGAFYAG

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
372		83		16	0.994512
377		16		83	0.994512
456			83	16	0.994512
616		90		10	0.90298
652		87		12	0.992554
655			14	85	0.993533
882	25			75	0.996473
1068			16	83	0.994512
1069			83	16	0.994512
1070	83	16			0.994512
1071	83		16		0.994512
1074	16	83			0.994512
1076	83	16			0.994512
1077	83			16	0.994512
1081	83			16	0.994512
1082	83		16		0.994512
1083		83		16	0.994512
1090	16			83	0.994512
1365	80		20		0.995493
1477		20	80		0.999996
1478		10	90		0.90298
1479	80			20	0.999996
1480		30		70	1.0
1481			90	10	0.90298
1482		10	70	20	0.999998
1483	80		20		0.999996
1485		20		80	0.999996
1486		20	80		0.999996
1489			20	80	0.999996
1491		20		80	0.999996
1494	80			20	0.999996
1495		20	80		0.999996
1497	80	20			0.999996
1634	11	88			0.923564
1636			11	88	0.923564
1637			11	88	0.923564
1719	37	62			1.0
1823		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain