SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2059

Length: 1164 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2059 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	51%
Blast2go	protein	-	-	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9TLG7

Fln msg:

Fln protein: MEEKTEPYSKGLSNTWLTVGPLPALISEAEACTLRPLEFFVAWQGVLTIAYSGFPPALCKLKRGINDMFSSLPKENPGSLWPKTSLACLKDSKFLSVSQLVQLREICREENLRFSEEDAVIVDKLSVVVYQNCCLEKTLMLTEIPLRCPANSSEPLLEEKLHIRSVLDEFADDNLPSYYFQVIREGHRTTHYRDQKVGSTLVHFLHHPLRLLARFRERVEAVMPGIYDWFLDDSLHITIRALL*

Protein Length: 245

Fln nts: ATGGGGGGCAGTATTAGTTGCAGGGCGTGCTATTTTTTGGCTACGCGCTTACATCCATCTCTAATCTGTTCCCGATCCTGTTGCTATTTTTTCGCTTTTTCCCGCACCCCTGCAACAACGGAGAAAAGGCTCTCTTGTCTTTTGAGACG_-_ATGGAGGAAAAGACAGAGCCTTATTCAAAGGGGTTATCGAATACATGGCTGACAGTGGGACCTCTGCCTGCCTTGATTTCGGAGGCAGAAGCTTGCACGTTGCGACCATTGGAGTTTTTCGTGGCTTGGCAAGGCGTGCTGACCATTGCATACTCAGGGTTCCCACCTGCTCTATGCAAGCTAAAGCGGGGAATCAATGACATGTTTTCAAGCCTACCGAAAGAAAATCCAGGATCTCTGTGGCCCAAGACGTCTTTAGCCTGTCTTAAGGACTCGAAATTTCTTTCCGTGTCTCAATTGGTTCAGCTTCGAGAAATCTGCAGGGAGGAAAACTTGAGATTTTCAGAAGAAGATGCTGTTATTGTGGACAAGCTGTCTGTTGTTGTGTATCAGAACTGTTGCTTGGAGAAGACACTGATGCTCACAGAAATCCCTTTGCGATGTCCAGCTAATTCATCAGAGCCACTGCTTGAGGAAAAATTGCACATTAGATCAGTTTTGGACGAATTTGCAGATGATAACTTACCTAGCTACTATTTTCAAGTCATAAGAGAAGGTCATCGGACAACGCACTACAGAGACCAAAAAGTGGGATCAACATTAGTGCATTTCCTCCATCACCCCCTTCGATTGTTAGCTAGATTCAGGGAGAGAGTTGAAGCTGTTATGCCTGGAATCTATGATTGGTTTTTGGATGATTCGCTTCATATCACAATCAGAGCTCTCCTCTAA___GGAACACCTTCCTCTTTCATCTGTCAATTGAAATTTGTAGGTCATCACATAGAGCTTTATTGTTTTTCTAATGACATTTATATCATCTGGCCATGAAGTTTGTGTGTCTTTGAAGACTACAAATAGGTCCTCTAGCATTTTCAGAATCTTTTCTACTGTTATGTTGTAAAGGTGGTGTCAAAGCCGAAAATTTGAGGAAAGATACTTGTATTTTCGTTAGAATTTACATTGTTAATGAAACGCATCCATTCTCATATTTAATAAGAGAAATGGATCCTGGATG

Fln Alignment:

sp_v1.1_unigene2059___TVGPLPALISEAEACTLRPLEFFVAWQGVLTIAYSGFPPALCKLKRGINDMFSSLPKENPGSLWPKTSLACLKDSKFLSVSQLVQLREICREEN-LRFSEEDAVIVDKLSVVVYQNCCLEKTLMLTEIPLRCPANSSEPLLEEKLHIRSVLDEFADDNLPSYYFQVIREGHRTTHYRDQKVGSTLVHFLHHPLRLLARFRERVEAVMPGIYDWFLDDSLHITIRALL
A9TLG7______________TSGGLACMIGSTLACRFEVAEFFVSWQGVLTLAFTGFPDALLELKTQVEEFYPGVMKEFPGSKWPKVSIGCLRDNKRLSRLDLERLRDICSEENSYLISTTPPVEVDKLSIVLFSNCCLEQTLMTTDVTLALPADLRPPNSEHRASVRSVLDEFRRENLDNYYFNASKDGNRSAHYRGFKAGVTLVHFLTSIPRAIARFRERVERELPNMYDWFADRALHITVRAIL

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
117	80	20			0.995493
180		66	33		1.0
488	80			20	0.999996
495		20		80	0.999996
496		20		80	0.999996
498	20			80	0.999996
499		80	20		0.999996
500	80		20		0.999996
504	16		83		0.999991
506	83		16		0.999991
508	83	16			0.999991
509			16	83	0.999991
540		11		88	0.923564
543		11		88	0.923564
546	88			11	0.923564
551		25		75	1.0
609		14		85	0.993533
613	85			14	0.993533
639		16	83		0.994512
640	83	16			0.994512
643			83	16	0.994512
659	60			40	1.0
663			40	60	1.0
664		60		40	1.0
665			40	60	1.0
666	40			60	1.0
668	40			60	1.0
669			40	60	1.0
672		40	60		1.0
675	60		40		1.0
676	60		40		1.0
679	40			60	1.0
683	60	40			1.0
831		66		33	0.997452
995		20		80	0.995493
998			60	40	1.0
1038	50	50			1.0
1039	50	50			1.0
1040		50		50	1.0
1041		50		50	1.0
1042	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain