SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2056

Length: 1480 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2056

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	emb1789 (embryo defective 1789); nucleic acid binding / zinc ion binding	-	-	5.0e-26	52%
FL-Next	sp=Zinc finger CCCH domain-containing protein 65; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%
Blast2go	low quality protein: zinc finger ccch domain-containing protein 4-like	-	-	1.0738e-28	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, CCCH-type	IPR000571	-	1.0738e-28	67%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9LTS7

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 90 aas, putative chimeric sequence, your sequence is shorter than subject: 266 - 675

Fln protein: AKRKLAKRKKQALKDKEAGVKRLKLAPVTKSKPVILCKFYMKGRCAQGSQCSFSHDAVPATKSEICKYHVNQCCLKGDECPFSHDLSAFPCKFYHTRGYCLERDMCRFSHKPITENALQDLLKQSELEKQELREQESIQGSIQHFVANNPQKLDEQRKFSVGDRFEDVTFVEPSKSALGNNRQISEERRDSLAFQNPGKGNRDEPSKTIFSEEQQISMEKGASLCVSNMSPIPKHNRLSYDLGAEGINDAFFEARKAALNALAAS*

Protein Length: 267

Fln nts: GCAAAGAGGAAGCTTGCAAAAAGGAAGAAACAGGCACTAAAGGACAAAGAAGCTGGTGTTAAAAGGTTGAAGTTGGCACCAGTCACCAAATCCAAGCCTGTGATTCTGTGCAAGTTCTACATGAAAGGGCGGTGTGCACAGGGTTCACAATGTTCTTTCTCACATGATGCAGTTCCTGCCACTAAATCTGAGATATGCAAGTATCATGTCAACCAATGCTGTTTGAAAGGGGATGAATGCCCATTTTCACATGATCTTTCAGCTTTTCCATGCAAATTTTACCATACAAGGGGCTATTGTTTGGAAAGAGATATGTGTCGCTTCTCCCATAAGCCGATTACAGAAAATGCTTTACAGGATCTTTTAAAGCAATCTGAGCTAGAAAAACAAGAATTGCGTGAGCAGGAAAGTATTCAAGGTAGTATTCAACATTTTGTTGCAAATAATCCACAGAAGTTGGATGAGCAAAGGAAATTTTCTGTTGGAGATCGATTTGAAGATGTTACTTTCGTGGAACCTTCTAAGTCTGCTTTAGGAAACAATCGGCAAATATCAGAGGAAAGGAGAGACAGCTTAGCATTTCAAAATCCTGGAAAAGGCAATCGCGATGAACCTTCTAAGACTATATTTTCAGAAGAACAGCAGATATCAATGGAGAAAGGAGCTAGTTTATGTGTTTCCAATATGTCACCAATCCCCAAGCACAACAGACTTAGTTATGATCTGGGAGCTGAAGGTATAAATGATGCTTTCTTTGAAGCCCGGAAGGCTGCATTGAATGCTTTAGCTGCGTCGTGA___CCATGGTGCCAATCAATTTCACGTGGCTTAGTCAGAGTACCCACTTTCATTTCAAGTGCAGATCCTACCGCAAATACAGATATGGATGTTGATTATCTTGGCTCCTCAGGTACTGGCAATGAATATGTAGAGGCACATAAAAAGAGACATGGAGAGCATCTGGTGGGAGGAAATCACGAACTTCCTCCTAGTGGCCTCTTGAATGGTTCAAAGAGTGCAATAAAAATGCTGGAAGATCTAATAAGTGGCAATGAAGAGTTTGACATACATAGCAAACATGGAAATTCTTTTCGTCTGTACTGACACAATGTAAAATAAATCGAGACAATAGGTTACAGAAAAGCCAAGGTTTATTATAATGTACTTATTTTTACTCTTGAAGCTGTTGTCGGTTTTTTTGGATGAGCATCGGAATGTGAAGGTTTCAGCTTATTGTGCAATAGTCAATTTATTACTAATAGTCATCCGGAAAGAAAGATCTCTATATCATTTGTGATGTTTCAAGAACCTTCCATACATGCATATGTAGGAGAATGCGACTTCATTGACTCTAACATGGTGAAAGGATTAATAGGACTTGCTTATTTATTATTATGCTTGGATTTTGATATTCCTTGTTCTTAAGCAAAAAACGAAAGAGAATTGCTTATTTATTATGTAAGGAACTACTGTTAATCTTGAC

Fln Alignment:

sp_v1.1_unigene2056___GVKRLKLAPVT-KSKPVILCKFYMKGRCAQGSQCSFSHDAVPATKSEICKYHVNQCCLKGDECPFSHDLSAFPCKFYHTRGYCLERDMCRFSHKPITENA
Q9LTS7______________GVKKLKLKPVAPKPKPIKYCRHYLKGRCHEGDKCKFSHDTIPETKCSPCCYFATQSCMKGDDCPFDHDLSKYPCNNFITKGFCYRGDSCLFSHKGTPQSA

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
213		66		33	0.997452
258		25		75	0.996473
381	75		25		0.996473
410	50		50		1.0
457		16		83	0.994512
499	16		83		0.994512
544		80		20	0.995493
630			20	80	0.995493
631			20	80	0.995493
632		80	20		0.995493
700	75		25		0.996473
797		33		66	0.997452
808	33		66		1.0
812		66		33	0.997452
817		33		66	0.997452
831	50	50			1.0
914	28		64	7	1.0
1126		62		37	1.0
1224			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain