SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2047

Length: 1505 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2047

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ALG6, ALG8 glycosyltransferase family protein; K03848 alpha-1,3-glucosyltransferase [EC:2.4.1.-]	-	-	50%
FL-Next	sp=Probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase; Arabidopsis thaliana (Mouse-ear cress).	-	-	51%
Blast2go	protein	-	-	65%

Source	ECs	Term	Type	e value	Identity
AutoFact	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	0.0	50%

Source	KEGGs	Term	Identity
AutoFact	Fructose and mannose metabolism	00051	50%
AutoFact	N-Glycan biosynthesis	00510	50%
AutoFact	Mucin type O-Glycan biosynthesis	00512	50%
AutoFact	Various types of N-glycan biosynthesis	00513	50%
AutoFact	Other types of O-glycan biosynthesis	00514	50%
AutoFact	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	50%
AutoFact	Glycosaminoglycan biosynthesis - keratan sulfate	00533	50%
AutoFact	Lipopolysaccharide biosynthesis	00540	50%
AutoFact	Peptidoglycan biosynthesis	00550	50%
AutoFact	Glycerolipid metabolism	00561	50%
AutoFact	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	50%
AutoFact	Sphingolipid metabolism	00600	50%
AutoFact	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	50%
AutoFact	Glycosphingolipid biosynthesis - globo series	00603	50%
AutoFact	Glycosphingolipid biosynthesis - ganglio series	00604	50%
AutoFact	Carotenoid biosynthesis	00906	50%
AutoFact	Zeatin biosynthesis	00908	50%
AutoFact	Flavonoid biosynthesis	00941	50%
AutoFact	Anthocyanin biosynthesis	00942	50%
AutoFact	Flavone and flavonol biosynthesis	00944	50%
AutoFact	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	50%
AutoFact	Betalain biosynthesis	00965	50%
AutoFact	Biosynthesis of type II polyketide products	01057	50%
AutoFact	Metabolic pathways	01100	50%
AutoFact	Biosynthesis of secondary metabolites	01110	50%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q9FF17

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 460 - 533

Fln protein: MGSHGDSSSLVWVLDKKFAIFSTVSFAFLIRVLVSLHPYSGAGNPPLYGDYEAQRHWMEITVHTPVKEWYKNTTDNNLSYWGLDYPPLTAYQSYSHGLALQALDPQSVALHTSRGYETRRSKLLMRWTVLTSDAIIFFPAALYFIAVYYNGRKDEDLVWAHAMILLQPCAILIDHGHFQYNCISLGLTVGAIAAVISNRELVACVLFCLALNHKQMSAYYAPAFFAHLLGKCLRRQNPIFNVIRLGLTVLGTFTVIWWPFLYSKEAILEVLARLAPLERGIYEDYVSSFWCSTSLLIKWKQRFSMSTLSYFALGATLTASLPSMVQQISAPSNRGFLYALLNSSFAFYLFSYQALLFLFILLYYTPMKSKEDGSRSNYIAQRLPKFWWALMSFYTLLLVMLHVLYLFVQPPTRYPFIFEAVITACAFSQFAILAIYTNIKQWRVPIDIPRSSDVKEKIN*

Protein Length: 461

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCGTTTGACATGATAAATTCTCGGATTCATCGCGCAGGGTATGACTGGTAAAT_-_ATGGGATCGCATGGAGATAGTTCTAGCCTTGTTTGGGTACTAGATAAAAAATTTGCAATATTTTCGACTGTTTCATTTGCATTCCTTATACGGGTCTTGGTATCTCTGCATCCCTACTCAGGTGCTGGAAACCCACCGCTATATGGGGACTATGAAGCTCAGAGGCACTGGATGGAGATCACAGTGCATACCCCTGTGAAAGAGTGGTACAAAAATACTACTGATAATAATCTCAGCTACTGGGGTCTTGATTATCCGCCACTCACAGCTTATCAGAGCTACAGTCATGGACTGGCATTGCAGGCCCTGGATCCTCAATCTGTAGCTTTGCACACTTCTAGAGGTTATGAGACCCGTCGCAGCAAACTCCTAATGCGTTGGACAGTGTTAACATCAGATGCAATCATATTTTTTCCTGCAGCCTTATACTTTATTGCTGTTTATTATAATGGGAGGAAGGATGAAGACCTTGTATGGGCACATGCAATGATTCTTCTTCAACCATGTGCAATATTAATAGACCATGGACACTTCCAGTATAATTGCATCAGCCTTGGTTTAACTGTTGGAGCAATAGCTGCAGTTATCTCAAACAGAGAGCTAGTAGCATGTGTACTTTTCTGTCTTGCTCTTAATCATAAACAGATGAGTGCATATTATGCTCCGGCATTTTTTGCTCATCTTTTGGGGAAGTGTTTACGCCGCCAAAATCCCATTTTTAATGTCATAAGACTTGGCTTAACTGTTCTTGGAACATTCACAGTCATATGGTGGCCCTTTCTTTATTCCAAAGAAGCCATACTAGAGGTTCTTGCACGCTTAGCACCACTTGAACGGGGTATATATGAGGATTACGTTTCTTCCTTTTGGTGCTCCACTTCATTACTTATAAAATGGAAGCAGAGGTTTTCAATGTCCACACTATCATATTTTGCCTTGGGTGCTACTTTGACTGCTTCTCTCCCATCCATGGTTCAGCAAATATCTGCCCCAAGTAACAGAGGATTCCTTTATGCGTTGCTTAACAGCTCATTTGCCTTTTATTTATTTTCATATCAAGCTCTGCTGTTTTTGTTTATTCTTCTGTACTATACACCAATGAAAAGCAAGGAGGATGGAAGCAGGAGCAATTACATAGCACAGAGGCTTCCAAAGTTTTGGTGGGCATTAATGTCCTTCTATACTCTTCTTTTAGTCATGCTACATGTATTATATCTGTTTGTGCAGCCTCCCACAAGGTACCCTTTTATCTTTGAGGCTGTTATAACAGCATGTGCATTTTCTCAATTTGCTATTCTTGCTATATATACGAACATAAAACAATGGAGGGTACCCATTGATATACCGCGTAGCTCAGATGTCAAAGAAAAGATTAACTAACTCAACTTATGATAACAATCTTCCCCTCTTATGATATCTTTGTTTCCT

Fln Alignment:

sp_v1.1_unigene2047___GDSSSLVWVLDKKFAIFSTVS---FAFLIRVLVSLHPYSGAGNPPLYGDYEAQRHWMEITVHTPVKEWYKNTTDNNLSYWGLDYPPLTAYQSYSHGLALQALDPQSVALHTSRGYETRRSKLLMRWTVLTSDAIIFFPAALYFIAVYYNGRK---DEDLVWAHAMILLQPCAILIDHGHFQYNCISLGLTVGAIAAVISNRELVACVLFCLALNHKQMSAYYAPAFFAHLLGKCLRRQNPIFNVIRLGLTVLGTFTVIWWPFLYSKEAILEVLARLAPLERGIYEDYVSSFWCSTSLLIKWKQRFSMSTLSYFALGATLTASLPSMVQQISAPSNRGFLYALLNSSFAFYLFSYQ-------------------------------------------------ALLFLFILLYYTPMK----SKEDGSRSNYIAQRLPKFWWALMSFYTXXXXXXXXXXXXXQPPTRYPFIFEAVITACAFSQFAILAIYTNIKQWRVPIDIPRSSDVKEKI
Q9FF17______________GSSIDTWWWLTHKGTTTSFLCISLFALLIRSAVTMYPYSGAGIPPKFGDFEAQRHWMEITTNLPVIDWYRNGTYNDLTYWGLDYPPLTAYQSYIHGIFLRFFNPESVALLSSRGHESYLGKLLMRWTVLSSDAFIFFPAALFFVLVYHRNRTRGGKSEVAWHIAMILLNPCLILIDHGHFQYNCISLGLTVGAIAAVLCESEVLTCVLFSLALSHKQMSAYFAPAFFSHLLGKCLRRKSPILSVIKLGIAVIVTFVIFWWPYVHSLDDFLMVLSRLAPFERGIYEDYVANFWCTTSILIKWKNLFTTQSLKSISLAATILASLPSMVQQILSPSNEGFLYGLLNSSMAFYLFSFQVHEKSILMPFLSATLLALKLPDHFSHLTYYALFSMFPLLCRDKLLIPYLTLSFLFTVIYHSPGNHHAIQKTDVSFFSF--KNFPGYVFLLRTHF-FISVVLHVLYLTIKPPQKYPFLFEALIMILCFSYFIMFAFYTNYTQWTLSSHFGSSDKEKKQI

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
277	87	12			0.992554
385		83		16	0.994512
387	16		83		0.994512
399			16	83	0.994512
483	14	85			0.993533
484	85			14	0.993533
487	16			83	0.994512
489	16			83	0.994512
490			16	83	0.994512
491	16			83	0.994512
492		33		33	1.0
494	14	57	14	14	0.979185
497		71	14	14	0.984337
498	85		14		0.993533
499	14	14	71		0.984337
500	14	85			0.993533
504	71	14			0.984337
505		14	14	71	0.984337
506	85		14		0.993533
507		85	14		0.993533
509	16		16		0.988813
511	16	16		66	0.988813
513		16		83	0.994512
519		16	83		0.994512
520	16			83	0.994512
521			16	83	0.994512
522		16		83	0.994512
523	83	16			0.994512
645	25		75		0.996473
699			16	83	0.994512
700			16	83	0.994512
707	16			83	0.994512
717		83	16		0.994512
855			80	20	0.995493
937		13		86	0.999973
1025			90	10	0.90298
1078		11		88	0.923564
1138	75		25		0.996473
1139			25	75	0.996473
1140		75	25		0.996473
1147		25		75	0.996473
1148	25	75			0.996473
1169	16	83			0.994512
1172			16	83	0.994512
1173	83		16		0.994512
1234			20	80	0.995493
1277		20		80	0.995493
1345		85		14	0.993533
1364	66		33		1.0
1396		83		16	0.994512
1403	66	33			1.0
1432		83		16	0.994512
1486		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain