SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2046

Length: 1510 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2046 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mismatch repair protein n=1 Tax=Solanum lycopersicum RepID=D6QY20_SOLLC	-	-	66%
FL-Next	sp=DNA mismatch repair protein Msh2; Arabidopsis thaliana (Mouse-ear cress).	-	-	63%
Blast2go	dna mismatch repair protein msh2	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	mismatch repair	GO:0006298	Biological Process	79%
Blast2go	negative regulation of reciprocal meiotic recombination	GO:0045128	Biological Process	79%
Blast2go	damaged DNA binding	GO:0003684	Molecular Function	79%
Blast2go	mismatched DNA binding	GO:0030983	Molecular Function	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%

Source	InterPros	Term	Type	Identity
Blast2go	DNA mismatch repair protein MutS, core	IPR007696	-	79%
Blast2go	DNA mismatch repair protein MutS, connector	IPR007860	-	79%
Blast2go	DNA mismatch repair protein MutS, clamp	IPR007861	-	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O24617

Fln msg: Distance to subject end: 328 aas, your sequence is shorter than subject: 503 - 937

Fln protein: VVTLAVTWRLAKTGTPGKLGCFEDILFASNDMQDTPVIIAVQYVTQDNGYLVGMAFIDLTKRTLGMTEFIDDNQYTNLESAMVALGCRECLLPLHTGKSPANKRLHDVLARCNVLLTEKKKAEFNSRDVDQDLSRLVKGPIESLRDLVASSDCAAGAIGALLSYTDLLADDNNYGRFNIQRYSLESYMRLDAAALRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLNRWLKQPLLDVDEIKCRLDLVQVFVEDTALRQDLRQHLKRITDIERLVRKLEKRSANLQDIVKLYQTSIRLPVIKSCLERYEGVFSLLIRERYTDAFEFWTDEEHLTKFSALVEAAVDLDQLDNGEYMISAGYDSSLLTLKDERDGVEEQIRKVHQQAANDLDLPVDKSLKLDKGTQFGHVFRITKKEEPKVRKKLNTQYIVLETRKDGVKFTNAKLKRLGEQYMKLVEAYNSTQRELVSRVVQTAATFTEVFEVLASLLSELDVLLSFADLA

Protein Length: 504

Fln nts: CGTCGTGACCTTGGCTGTCACTTGGAGGTTGGCAAAGACTGGAACTCCTGGCAAGCTTGGGTGTTTTGAGGACATTCTATTTGCAAGCAATGACATGCAAGATACACCTGTGATAATAGCTGTGCAATATGTTACTCAGGATAATGGATACTTGGTGGGGATGGCATTTATTGATCTGACTAAGAGAACCTTAGGCATGACAGAGTTTATTGATGACAACCAATACACAAATCTGGAATCTGCCATGGTAGCTCTTGGATGCAGGGAATGTTTGTTACCGCTACACACTGGGAAGTCACCTGCTAATAAGCGCCTGCATGATGTGTTGGCGAGATGTAATGTACTCTTAACTGAAAAAAAGAAAGCTGAGTTCAATTCCAGGGATGTTGATCAAGACCTTAGTCGCCTAGTGAAAGGTCCTATAGAGTCATTGAGGGATTTAGTTGCAAGTTCAGATTGTGCCGCTGGTGCTATAGGGGCTCTCCTCTCTTATACAGATTTGCTCGCAGATGATAACAATTATGGGAGATTTAACATACAACGGTATAGCTTGGAGAGCTACATGCGGCTGGATGCTGCAGCACTACGAGCTTTAAATGTTCTTGAAAGTAAGACAGATGCAAACAAGAATTTCAGCTTGTTTGGACTGATGAATAGGACTTGTACTGCTGGTATGGGGAAGAGGTTGTTGAACAGGTGGCTCAAACAACCTCTATTAGATGTAGATGAGATCAAATGTAGGTTGGATCTGGTGCAGGTATTTGTTGAGGACACAGCATTGCGCCAGGATTTGAGACAGCATCTGAAAAGAATTACAGATATTGAACGACTTGTGCGGAAACTTGAGAAGAGGAGTGCTAATCTACAAGATATTGTAAAGCTGTATCAGACAAGCATACGGCTTCCTGTCATTAAAAGTTGTCTAGAACGATATGAAGGTGTATTTTCCTTATTAATCAGAGAGAGGTATACAGATGCCTTTGAATTTTGGACTGATGAGGAGCATTTGACAAAGTTTTCTGCTCTTGTTGAGGCTGCTGTTGATCTTGATCAACTTGACAATGGAGAATACATGATCTCAGCCGGTTATGATTCTAGCCTGTTGACGCTCAAGGATGAACGAGATGGAGTGGAAGAACAAATACGGAAGGTGCATCAGCAAGCTGCAAATGATCTGGATCTTCCTGTGGACAAGAGTTTGAAACTGGACAAGGGCACACAATTTGGACATGTATTCAGGATTACAAAGAAAGAGGAACCAAAAGTACGGAAGAAGTTGAATACACAGTATATTGTTTTAGAAACAAGAAAGGATGGTGTCAAATTCACAAATGCAAAACTCAAACGGCTCGGGGAGCAGTACATGAAGTTGGTTGAGGCATATAACAGTACTCAAAGAGAACTCGTTAGCCGGGTAGTACAAACGGCAGCAACATTTACTGAAGTTTTTGAAGTTCTTGCTAGTCTACTTTCTGAATTGGATGTTCTGCTGAGTTTTGCTGATCTAGCA

Fln Alignment:

sp_v1.1_unigene2046___WRLAKTGTPGKLGCFEDILFASNDMQDTPVIIAVQYVTQDNGYLVGMAFIDLTKRTLGMTEFIDDNQYTNLESAMVALGCRECLLPLHTGKSPANKRLHDVLARCNVLLTEKKKAEFNSRDVDQDLSRLVKGPIESLRDLVASSDCAAGAIGALLSYTDLLADDNNYGRFNIQRYSLESYMRLDAAALRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLNRWLKQPLLDVDEIKCRLDLVQVFVEDTALRQDLRQHLKRITDIERLVRKLEKRSANLQDIVKLYQTSIRLPVIKSCLERYEGVFSLLIRERYTDAFEFWTDEEHLTKFSALVEAAVDLDQLDNGEYMISAGYDSSLLTLKDERDGVEEQIRKVHQQAANDLDLPVDKSLKLDKGTQFGHVFRITKKEEPKVRKKLNTQYIVLETRKDGVKFTNAKLKRLGEQYMKLVEAYNSTQRELVSRVVQTAATFTEVFXXXXXXXXXXXXXXSFADLA
O24617______________WRLVKTGSPGNIGSFEDVLFANNEMQDTPVVVSIFPSFHDGRCVIGMAYVDLTRRVLGLAEFLDDSRFTNLESSLIALGAKECIFPAESGKSNECKSLYDSLERCAVMITERKKHEFKGRDLDSDLKRLVKGNIEPVRDLVSGFDLATPALGALLSFSELLSNEDNYGNFTIRRYDIGGFMRLDSAAMRALNVMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDLNEIKTRLDIVQCFVEEAGLRQDLRQHLKRISDVERLLRSLERRRGGLQHIIKLYQSTIRLPFIKTAMQQYTGEFASLISERYLKKLEALSDQDHLGKFIDLVECSVDLDQLENGEYMISSSYDTKLASLKDQKELLEQQIHELHKKTAIELDLQVDKALKLDKAAQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQSVVDDYRSCQKELVDRVVETVTSFSEVFEDLAGLLSEMDVLLSFADLA

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1036		83		16	0.994512
1039		40		60	1.0
1130		80		20	0.995493
1315		75	25		0.996473
1317		25		75	0.996473
1330	25			75	0.996473
1332			25	75	0.996473
1333	25			75	0.996473
1334	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain