SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2040

Length: 3793 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2040
ATGGGGGGTGGAGTGGCGCAGTGGTAAAATGGAAGAGTTACCGCGCGGTGCTAAGGGATGAAAGTGAAACAAGGTGGCCGGTAAAACTTGGCTGGCCCAACTTACCAAGCACGCGTCTGACATTGGCCCTCCCTCTCACCAAAGAATTCAGACAAGCGAGTTCATACGAACCGTTATGTTAAGACAAAATATATTACATTAAGTCTAAAAAGCTGACTGTCACTCGACACCTGTTTAGATTCAGAGTAAACCGGAACATAATAGAAAGGAACAGCGTCGAGGACGACGGGAAACAGAGCGCAAAGGCTTCTGCTGGAACTTTAAGATCCGGGAGCTTGACGGCCGGAGGCTCAAAATAAGGTAATGTCGTTATTTTTTTGAAGAAATTTATGGGTCAAATCCCTTGAAGCGGCTGTAATTTTGCTGAAATGCGAAAATTGCCGTGATTTCGAGCATTTAATGGTAGAAGCCGTACATTTTGAGCTGTTGATGGGGAAGGGGATCGTTTCGAGCCTTTTAATGGTGTAAGCTGGTGATTTGGAGGGAGAAAACTGGCGATTCTGAGCTATTCGACGGTGAAAACTGAATATTTCGAGTCTTTTGGGGAAAGACTTGTCCCAGAAGCTGTCGCGGAGCCGAATGAATCTATGAACGGTTTAAATAGTGTCCGAAGCCTTTTATTTTGTGAATTTGCGGAAAATAGCTGTTTCTTTTGGAAACTAGCCAGGGTTTGATCTTGATTTTTAGTTGTGTAATATTGAAGACTGATCCCGGAACGCTTGGCGGAGGTAAATGAGGCTTTGAACGGTCTGAACGGGTCCTTGTGGTTGCTGGTTCGGTTAACCTTGTAAAGCTGGAGATAACAGGTAAATTTGTGGCCAGAGTTTGATGAGATTGGGGCTTGAAGTTTCTAGGTTTTGGATGTGAGCGACCAAGATCCTGAAGCAGCCCTCATGGAGGACTTTTACAGTCGCTCGGGGGAAGAAGACCTCTTGAGGGACTCGAATGCAAATGCTAAGCAATGTGGACCGGAACTGGCTTCCTTGGGGTCTTCGCTGACGCCTTCAGCGTCTTTTAGAACGGATGTCAAGGGGAGCAAGAAGAAAAACCCGATAAGGCCCAGTCTGGAGGGTGATGACGTCTTTCATTATTTACATGGCTCTGATCCAGTTAAGGTTGAGCTTAACCGGCTTGAAAATGAAGTGAGAGATAAGGATCGTGAATTAGCTGAAGCTCAGGCAGAAATCAAGGCTTTGAGGTTGACAGAGCGCATGAAAGAAAAGGCAGTGGAAGAGCTAACGGATGAACTGGCGAAAATAGATGAAAAGCTGAAGAACTGTGAAGCTTCTCTTGAAAGCAAGAACCTTGAAATCAAGAAAATTAATGATGAGAAGAAAGCAGCATTGGCTGGCCAATTTGCAGCAGAAGCAACTCTTCGAAGGGTCCATGGAGCTCAAAAGGATGATGACATGCCACCTATTGAAGTTATTCTTGCTCCACTTGAAGCAGAACTCAAGCTTGCACGACAAGAGATTTCAAAATTGCAGGAGGATAACAGGGCTTTGGAAAGACTCACAAAGTCCAAAGAAGCAGCCCTCCTTGATGCAGAAAGGACAGTGCAGTTTGCTCTGGCAAAAGCTTCGATGGTTGATGATTTACAAAATAGGAACCAGGAGTTGATGAAACAGATTGAAATATGCCAGGAGGAGAACAAAATATTGGACAAAATGCATCGGCAAAAGGTTGCAGAAGTTGAGAAGTTATGTCAAACAGTTCGTGAACTAGAGGAGGCTGTCCTTTCAGGCGGGGCTGCTGCCAATGCTGTGCGTGATTATCAGCGGCAAGTGAATGAATTGATTGAAGGTAAGAAGACACTTGAGAGAGAACTAGCTCGGGCAAAGATAACGGCAAATCGAGTTGCTTGTGTTGTTGCCAATGAATGGAAGGATGGGAATGACAAAGTCATGCCTGTAAAGCAGTGGCTTGAAGAGCGTCATTTCTTGCAGGGTGAAATGCGGCAGCTTCGTGATAAATTAGCCATTGCAGAGCGGACTGCGAAAAGTGAAGCAGCACTCAAAGAGAAGTTTCAACTACGGTTGAAAGTAGTTGAAGAAGGAATAAGAGGATCACCAAATGGTGCTATTCGACCATCCTCCTCCGATGGACGAAGCATTAGCAATGGTCCTTCTCGCCGCCAATCAATTGGTGGTGCAGAGATTGCATCAAGAGTCATGCCAAATGGTTTTGGTCCAAGGAGATCTTCACTTTCTCAAATGAGGTCTTCACTATCCAGTAATGCCAGTACAGTTTTAAAGAGTGCAAAGGGAACATCTAGGTCATTTGATGGTGGAAGATCATTCGATGGTGGGAGATCAGTAGAACGCAACAAGACATTTACAAATGGACTCAGTGAGAACCGCACAACTAACAAAAGTAATGGGATATCCAGAAATGCCGAATCACATGATGCTGGGAAAGAGAATTCAGATAGCAAACCACCTGAATTTGCAGAAGTTGGGCCTGATGATTCTGTTTCAGGTGTGTTGTATGACATGCTACAAAAGGAGGTGATAGCCTTGAGAAAAGCTGCCAATGAAAAGGATCAAAGTCTTAAAGACAAGGATGATGCAATTGAGATGCTAGCTAAGAAAGTGGATACTTTGACAAAAGCAATGGAGGTGGAGGCAAAGAAAATGCGCAGAGAAGTAGCTGCCATGGAGAAAGAGGTAGCTTCAATGAGGATTGATAAGGAGCATGATCAAAGAGCAAGACGATTGAGTAGTTCGAGGGGAACTGTAAATAGCTCTCAGCTTTCCTCTGGAAGAAGTATGAGACACACTTAAATTGTGCCTGGGTATCAGGAATGCAAGCAAACTCGGCCTAATTTTCCAACGTAATGCCTATGCACAATCATTATGGACAGACTGAATGTACTGTTCAAAATGGTTATAAAGCACGTATTCACTTGCATGGCAGTACATTACAGTGTCACAGATGAGAATGTGAAGGTGTCTGGTTGAGTAAACTATTAACTAACTATATTGCATGTTTCTGCTTCCCTGTGATGGTGTGACAATTGGCACTACTGGAAAAATCCAAGTACTTGTGGCTTGTGCATACACAGATGATGAATTGAAGGCATGGTATACAAGCTCATGTGTTTACAAAGCAGACTGCTGGCATTAAATTGAGGTGGAAGGTTGAGCTTGCTCACTTTTTGGGTTTATCTTTTGTGCTGCGTTGTCAACTTATCGCTATTGACTAGTCTCTAGGTTTATGTAATATGTTGTGCTACTTGGGTTGAGCCAAGTTCAGATTTTGCATGGGAAGGCAGTGTGTTGACATTTCTAGTATCTGTGAATATTTATTTGTCTATAGGTTATAATCTGATTTCTATTCACTTGATGTGTTTCTAATACTGGCGGCCTTACAGCTTTCCTCACCCTTTCAATTCTTCCCCTGCTCATTTTGGTGTGTAATGCTTGTCGTTTTGGGAGGATTACTAATCTTCCAGATAGATTATTGCCGCGACCATAATTATTCATTTCGGATATATTTACTAAGAATTTGCAACAACACAGGATCCCCAGTCTCTGTTTTGAAAAGAGAATTCTTTCAAGACTTGTATTTGTTCTGTTTTGAACGAAGTTAAACAAGTTGGCTGCAGCTCGGTTTCTGGTTTGTTATATGCATATATTTCGTAATTAGCATATATTGTATACTGGATCTTGTGCATGTGTAGGATCTTGGAGCATTAAATTAATAAATGAAAAGAAAGTCATTTCTTTCTTAG

Ace file of the UniGene sp_v1.1_unigene2040

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATMAP70-2 (microtubule-associated proteins 70-2); microtubule binding	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	at1g68060 t23k23_9	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	microtubule binding	GO:0008017	Molecular Function	0.0	81%
Blast2go	cortical microtubule, transverse to long axis	GO:0010005	Cellular Component	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Myosin II heavy chain-like	IPR009768	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABU8

Fln msg: your sequence is longer than subject: 630 - 67

Fln protein: MEDFYSRSGEEDLLRDSNANAKQCGPELASLGSSLTPSASFRTDVKGSKKKNPIRPSLEGDDVFHYLHGSDPVKVELNRLENEVRDKDRELAEAQAEIKALRLTERMKEKAVEELTDELAKIDEKLKNCEASLESKNLEIKKINDEKKAALAGQFAAEATLRRVHGAQKDDDMPPIEVILAPLEAELKLARQEISKLQEDNRALERLTKSKEAALLDAERTVQFALAKASMVDDLQNRNQELMKQIEICQEENKILDKMHRQKVAEVEKLCQTVRELEEAVLSGGAAANAVRDYQRQVNELIEGKKTLERELARAKITANRVACVVANEWKDGNDKVMPVKQWLEERHFLQGEMRQLRDKLAIAERTAKSEAALKEKFQLRLKVVEEGIRGSPNGAIRPSSSDGRSISNGPSRRQSIGGAEIASRVMPNGFGPRRSSLSQMRSSLSSNASTVLKSAKGTSRSFDGGRSFDGGRSVERNKTFTNGLSENRTTNKSNGISRNAESHDAGKENSDSKPPEFAEVGPDDSVSGVLYDMLQKEVIALRKAANEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVASMRIDKEHDQRARRLSSSRGTVNSSQLSSGRSMRHT*

Protein Length: 631

Fln nts: ATGGGGGGTGGAGTGGCGCAGTGGTAAAATGGAAGAGTTACCGCGCGGTGCTAAGGGATGAAAGTGAAACAAGGTGGCCGGTAAAACTTGGCTGGCCCAACTTACCAAGCACGCGTCTGACATTGGCCCTCCCTCTCACCAAAGAATTCAGACAAGCGAGTTCATACGAACCGTTATGTTAAGACAAAATATATTACATTAAGTCTAAAAAGCTGACTGTCACTCGACACCTGTTTAGATTCAGAGTAAACCGGAACATAATAGAAAGGAACAGCGTCGAGGACGACGGGAAACAGAGCGCAAAGGCTTCTGCTGGAACTTTAAGATCCGGGAGCTTGACGGCCGGAGGCTCAAAATAAGGTAATGTCGTTATTTTTTTGAAGAAATTTATGGGTCAAATCCCTTGAAGCGGCTGTAATTTTGCTGAAATGCGAAAATTGCCGTGATTTCGAGCATTTAATGGTAGAAGCCGTACATTTTGAGCTGTTGATGGGGAAGGGGATCGTTTCGAGCCTTTTAATGGTGTAAGCTGGTGATTTGGAGGGAGAAAACTGGCGATTCTGAGCTATTCGACGGTGAAAACTGAATATTTCGAGTCTTTTGGGGAAAGACTTGTCCCAGAAGCTGTCGCGGAGCCGAATGAATCTATGAACGGTTTAAATAGTGTCCGAAGCCTTTTATTTTGTGAATTTGCGGAAAATAGCTGTTTCTTTTGGAAACTAGCCAGGGTTTGATCTTGATTTTTAGTTGTGTAATATTGAAGACTGATCCCGGAACGCTTGGCGGAGGTAAATGAGGCTTTGAACGGTCTGAACGGGTCCTTGTGGTTGCTGGTTCGGTTAACCTTGTAAAGCTGGAGATAACAGGTAAATTTGTGGCCAGAGTTTGATGAGATTGGGGCTTGAAGTTTCTAGGTTTTGGATGTGAGCGACCAAGATCCTGAAGCAGCCCTC_-_ATGGAGGACTTTTACAGTCGCTCGGGGGAAGAAGACCTCTTGAGGGACTCGAATGCAAATGCTAAGCAATGTGGACCGGAACTGGCTTCCTTGGGGTCTTCGCTGACGCCTTCAGCGTCTTTTAGAACGGATGTCAAGGGGAGCAAGAAGAAAAACCCGATAAGGCCCAGTCTGGAGGGTGATGACGTCTTTCATTATTTACATGGCTCTGATCCAGTTAAGGTTGAGCTTAACCGGCTTGAAAATGAAGTGAGAGATAAGGATCGTGAATTAGCTGAAGCTCAGGCAGAAATCAAGGCTTTGAGGTTGACAGAGCGCATGAAAGAAAAGGCAGTGGAAGAGCTAACGGATGAACTGGCGAAAATAGATGAAAAGCTGAAGAACTGTGAAGCTTCTCTTGAAAGCAAGAACCTTGAAATCAAGAAAATTAATGATGAGAAGAAAGCAGCATTGGCTGGCCAATTTGCAGCAGAAGCAACTCTTCGAAGGGTCCATGGAGCTCAAAAGGATGATGACATGCCACCTATTGAAGTTATTCTTGCTCCACTTGAAGCAGAACTCAAGCTTGCACGACAAGAGATTTCAAAATTGCAGGAGGATAACAGGGCTTTGGAAAGACTCACAAAGTCCAAAGAAGCAGCCCTCCTTGATGCAGAAAGGACAGTGCAGTTTGCTCTGGCAAAAGCTTCGATGGTTGATGATTTACAAAATAGGAACCAGGAGTTGATGAAACAGATTGAAATATGCCAGGAGGAGAACAAAATATTGGACAAAATGCATCGGCAAAAGGTTGCAGAAGTTGAGAAGTTATGTCAAACAGTTCGTGAACTAGAGGAGGCTGTCCTTTCAGGCGGGGCTGCTGCCAATGCTGTGCGTGATTATCAGCGGCAAGTGAATGAATTGATTGAAGGTAAGAAGACACTTGAGAGAGAACTAGCTCGGGCAAAGATAACGGCAAATCGAGTTGCTTGTGTTGTTGCCAATGAATGGAAGGATGGGAATGACAAAGTCATGCCTGTAAAGCAGTGGCTTGAAGAGCGTCATTTCTTGCAGGGTGAAATGCGGCAGCTTCGTGATAAATTAGCCATTGCAGAGCGGACTGCGAAAAGTGAAGCAGCACTCAAAGAGAAGTTTCAACTACGGTTGAAAGTAGTTGAAGAAGGAATAAGAGGATCACCAAATGGTGCTATTCGACCATCCTCCTCCGATGGACGAAGCATTAGCAATGGTCCTTCTCGCCGCCAATCAATTGGTGGTGCAGAGATTGCATCAAGAGTCATGCCAAATGGTTTTGGTCCAAGGAGATCTTCACTTTCTCAAATGAGGTCTTCACTATCCAGTAATGCCAGTACAGTTTTAAAGAGTGCAAAGGGAACATCTAGGTCATTTGATGGTGGAAGATCATTCGATGGTGGGAGATCAGTAGAACGCAACAAGACATTTACAAATGGACTCAGTGAGAACCGCACAACTAACAAAAGTAATGGGATATCCAGAAATGCCGAATCACATGATGCTGGGAAAGAGAATTCAGATAGCAAACCACCTGAATTTGCAGAAGTTGGGCCTGATGATTCTGTTTCAGGTGTGTTGTATGACATGCTACAAAAGGAGGTGATAGCCTTGAGAAAAGCTGCCAATGAAAAGGATCAAAGTCTTAAAGACAAGGATGATGCAATTGAGATGCTAGCTAAGAAAGTGGATACTTTGACAAAAGCAATGGAGGTGGAGGCAAAGAAAATGCGCAGAGAAGTAGCTGCCATGGAGAAAGAGGTAGCTTCAATGAGGATTGATAAGGAGCATGATCAAAGAGCAAGACGATTGAGTAGTTCGAGGGGAACTGTAAATAGCTCTCAGCTTTCCTCTGGAAGAAGTATGAGACACACTTAA___ATTGTGCCTGGGTATCAGGAATGCAAGCAAACTCGGCCTAATTTTCCAACGTAATGCCTATGCACAATCATTATGGACAGACTGAATGTACTGTTCAAAATGGTTATAAAGCACGTATTCACTTGCATGGCAGTACATTACAGTGTCACAGATGAGAATGTGAAGGTGTCTGGTTGAGTAAACTATTAACTAACTATATTGCATGTTTCTGCTTCCCTGTGATGGTGTGACAATTGGCACTACTGGAAAAATCCAAGTACTTGTGGCTTGTGCATACACAGATGATGAATTGAAGGCATGGTATACAAGCTCATGTGTTTACAAAGCAGACTGCTGGCATTAAATTGAGGTGGAAGGTTGAGCTTGCTCACTTTTTGGGTTTATCTTTTGTGCTGCGTTGTCAACTTATCGCTATTGACTAGTCTCTAGGTTTATGTAATATGTTGTGCTACTTGGGTTGAGCCAAGTTCAGATTTTGCATGGGAAGGCAGTGTGTTGACATTTCTAGTATCTGTGAATATTTATTTGTCTATAGGTTATAATCTGATTTCTATTCACTTGATGTGTTTCTAATACTGGCGGCCTTACAGCTTTCCTCACCCTTTCAATTCTTCCCCTGCTCATTTTGGTGTGTAATGCTTGTCGTTTTGGGAGGATTACTAATCTTCCAGATAGATTATTGCCGCGACCATAATTATTCATTTCGGATATATTTACTAAGAATTTGCAACAACACAGGATCCCCAGTCTCTGTTTTGAAAAGAGAATTCTTTCAAGACTTGTATTTGTTCTGTTTTGAACGAAGTTAAACAAGTTGGCTGCAGCTCGGTTTCTGGTTTGTTATATGCATATATTTCGTAATTAGCATATATTGTATACTGGATCTTGTGCATGTGTAGGATCTTGGAGCATTAAATTAATAAATGAAAAGAAAGTCATTTCTTTCTTAG

Fln Alignment:

sp_v1.1_unigene2040___MLAKKVDTLTKAMEVEAKKMRREVAAMEKEVASMRIDKEHDQRARRLSSSRGTVNSSQLSSGRSMRH
D5ABU8______________MLAKKVDTLTKAMEVEAKKMRREVAAMEREVAAMRIDKEHDQRARRLTSSK-SVNSSQFLSGRTTRN

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
219	25	50		25	0.995533
220			25	75	0.996473
222			50	50	1.0
223		50	50		1.0
227	20	80			0.995493
228			80	20	0.995493
229	80		20		0.995493
230		80	20		0.995493
231	80		20		0.995493
232		80	20		0.995493
294	83			16	0.994512
295	83		16		0.994512
296		83	16		0.994512
297	83		16		0.994512
443		90	10		0.90298
789	85		14		0.993533
1188	88		11		0.923564
1198	90	10			0.90298
1199	90	10			0.90298
1200	90			10	0.90298
1204	90		10		0.90298
1205		10	90		0.90298
1208	90			10	0.90298
1209		10	90		0.90298
1212	90	10			0.90298
1214	90	10			0.90298
1218	90		10		0.90298
1230		90		10	0.90298
1329	88		11		0.923564
1330	12		87		0.992554
1456	11			88	0.923564
1529		88		11	0.923564
1530	88		11		0.923564
1531	88		11		0.923564
2395		90		10	0.90298
2396	90		10		0.90298
2397			10	90	0.90298
2398			10	90	0.90298
2435	88		11		0.923564
2661	90		10		0.90298
2663		10		90	0.90298
2707	90		10		0.90298
2769			90	10	0.90298
2770		90	10		0.90298
2771	90		10		0.90298
2772	88		11		0.923564
2775		88		11	0.923564
3566	57			42	1.0
3657		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain