SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2034

Length: 2674 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2034
GAGATGGAAGTGACTTTTCTGCGGCAATCATGGGAGCCCTATTCAGAGCTAGGCGAATTACAATTTGGACAGATGTGGATGGTGTGTATAGTGCAGATCCTCGAAAAGTTAGTGAAGCTGTGATATTGAAGACACTATCTTACCAGGAAGCCTGGGAAATGTCATATTTTGGGGCAAATGTGTTGCACCCTCGGACAATAATCCCAGTTATGAAGTACAATATTCCTATTGTGATAAGAAATGTTTTCATCTATCATCTCCCGGGACAAGTATATGTCATCCTTGTATTACAGAGGCTAAAGAGCTTGAGCCATGTTCAGACTCTGATTCAATTGTAAAAGGTTTTGCAACCATTGACAATGTAGCACTTGTAAATGTTGAAGGAACTGGAATGGCTGGTGTTCCTGGTACAGCGAGTGCAATTTTTGGTTCAGTCAAAGATGTTGGTGCAAATGTTATTATGATATCACAGGCAAGTAGTGAGCACTCTGTGTGCTTTGCAGTACCAGAAAAAGAGTTGGTGCTGTTGCAGAGGCCTTAAATAAGAGATTTAGAGAAGCTCTCGATGCTGGGCGGCTTTCACAGGTTGAGGTCATTTCTGACTGCAGCATTTTGGCAGCTGTTGGACAACGCATGGCAAGTACACCTGGAGTTTGTGCCACTTTATTTAATGCACTAGCAAAGGCCAATATAAATGTTCGGGCTATTGCTCAGGGTTGCTCTGAGTACAATATTACAGTGGTTGTGAAACGAGAAGATTCAATAAGGGCCTTGAGAGCTGTACACTCAAGGTTCTATCTTTCGAAGACAACCTTGGCTGTTGGCATAATTGGACCAGGTTTGATTGGAGGAACTCTTCTGGACCAGCTTAGGGATCAGGCAGCTGTGCTTAAGGAGGAATTTAACATTGATTTACGTGTGATGGGCATCATTGGTTCTAAAACAATGGTCCTGAGTGATCTGGGCGTAGACCTACAAACATGGAGGGAGCTTGTAAAAGAAAAAGGCCAGCCTGCTGATCTAGAAATGTTTATTCAGCGAGTGCATGGAAACAACTTTATACCAAATACAGTTATTGTAGATTGCACAGCCGATCCAGGAGTTGCTACGAATTACTACCAATGGCTGCGAAAAGGAATGCATATAATTACTCCTAATAAAAAGGCAAATTCAGGACCGCTAGAGCAATACCTAAGGTTGAGGGAACTTCAAAGACAATCCTATACACACTGCTTTTATGAAGCAACTGTTGGAGCTGGTCTTTCAATAATCAGCACTTTGCGGGGCCTTTTGGAGACCGGTGATAAAATTATACACATTGAAGGCATATTCAGTGGAACTTTGAGTTATATATTTAACAATTTCTCTGGGAGAGAAACTTTTAGTCAAATTGTAACGAAGGCAAAAGAAGCTGGCTACACCGAACCAGATCCAAGAGATGATCTATCAGGCATGGATGTTGCTAGAAAGGTCATAATCCTTGCAAGGGAGTGTGGTTTAAAGCTAGAGCTTGATGATATTCCTGTTCAGAACCTTGTCCCAGAACCTTTGCAGAGGTGCACTTCTGTGGAAGAATTTATGAATAAGCTTCCAGAATTTGATCATGAAATGAAAAAGCAAAGAGAAGATGCAGATTCTAGTGCTGAGGTTCTTAGATACGTTGGAGTTGTTGATACTGTTGCTAACAAGGGTCGTGTAGAGCTGAGGAGGTATTCAAAGACACATCCATTTGCCCAACTATATGGGTCCGACAATATCATTGCATTCACAACAACAAGGTATCATAAGCAACCACTTATTGTGAGAGGCCCAGGTGCAGGGGCAGAAGTTACTGCCGGTGGAGTTTTTAGTGACATTCTACGGTTAGCCTCCTATTTGGGTGCTCCATCTTAGTCATTATTTTGTTAGAACGAATGATTCTTCTCCTGCTGTGTTTGTTAACTACTGACTAGATTTTTATATTATAGTTAGAGTGAGATTTATATTCCTCTAGTATGTTCAATTTCTCCATGACGAGTCCTAGTTGGTTTAGATGCCTCCTATTCCTAGCTTTCCCACCTTGGATTCTAGACAGGAAAATTGAACATATACAGGTTTACAGGCAAAGGTTCGTAATGGAAAACTGGAGATTTTGCCATTACGAGCAGGGAAAGATGTAAATGGCAAGATTTGCATTAGCATAAGGAAATTTTTTTAAGACCTGGTCAAGGTTTAGGAGTCGTTCAAATTTTGTTTCATTTGAGAAGCACCGTTCCCTTGAGTATGTAATATGAAGATATGAGTAATCATCTTATGACATGGTTAACAAAAGTCCTAACTTGAATTGTGAACCTCTGGTGCCAGTTTGTTTTCTTTATTTTGGTTTCTATTTGCACTGACTTTAGAAATAAGGCAACTGGCTTGTAATATAGCAAGGACCCACCAAGGGGAGTCAGATAGAAGAGTGGATACAAGGAACTGTAATTAGCATCTCTAGATAACCTTGTTAAATGTCACAAGTGTGCTATGAACATTATTTACTGATGTTGAACCAAATCCTCACTTTTGGAATTGGACAATGGAAATCTACAGAATGTGAGTGCTTGAAATATTGTACCTACTTTTCCCAGCATCAATCTGAAAAATTTAAATAGTCTTTGAAGAAATATTTTCTGATAAAAAAAAAAAAAAAAAA

Ace file of the UniGene sp_v1.1_unigene2034

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aspartate kinase, putative (EC:2.7.2.4 1.1.1.3); K12524 bifunctional aspartokinase/homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]	-	-	73%
FL-Next	sp=Homoserine dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	aspartate kinase-homoserine dehydrogenase	-	-	87%

Source	ECs	Term	Type	e value	Identity
AutoFact	Aspartate kinase.	EC:2.7.2.4	-	0.0	73%

Source	KEGGs	Term	Type	Identity
AutoFact	Glycine, serine and threonine metabolism	00260		73%
AutoFact	Cysteine and methionine metabolism	00270		73%
AutoFact	Lysine biosynthesis	00300		73%
AutoFact	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064		73%
AutoFact	Biosynthesis of plant hormones	01070		73%
AutoFact	Metabolic pathways	01100		73%
AutoFact	Biosynthesis of secondary metabolites	01110		73%
AutoFact	Homoserine dehydrogenase.	EC:1.1.1.3	-	73%

Source	KEGGs	Term	Identity
AutoFact	Glycine, serine and threonine metabolism	00260	73%
AutoFact	Cysteine and methionine metabolism	00270	73%
AutoFact	Lysine biosynthesis	00300	73%
AutoFact	Biosynthesis of plant hormones	01070	73%
AutoFact	Metabolic pathways	01100	73%
AutoFact	Biosynthesis of secondary metabolites	01110	73%

Source	GOs	Term	Type	Identity
Blast2go	cellular biosynthetic process	GO:0044249	Biological Process	87%
Blast2go	cellular amino acid metabolic process	GO:0006520	Biological Process	87%
Blast2go	binding	GO:0005488	Molecular Function	87%
Blast2go	catalytic activity	GO:0003824	Molecular Function	87%

Source	InterPros	Term	Type	Identity
Blast2go	Homoserine dehydrogenase, catalytic	IPR001342	-	87%
Blast2go	Amino acid-binding ACT	IPR002912	-	87%
Blast2go	Aspartate/homoserine dehydrogenase, NAD-binding	IPR005106	-	87%
Blast2go	NAD(P)-binding domain	IPR016040	-	87%
Blast2go	Homoserine dehydrogenase, conserved site	IPR019811	-	87%
Blast2go	Homoserine dehydrogenase, short	IPR022697	-	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEG5

Fln msg:

Fln protein: MASTPGVCATLFNALAKANINVRAIAQGCSEYNITVVVKREDSIRALRAVHSRFYLSKTTLAVGIIGPGLIGGTLLDQLRDQAAVLKEEFNIDLRVMGIIGSKTMVLSDLGVDLQTWRELVKEKGQPADLEMFIQRVHGNNFIPNTVIVDCTADPGVATNYYQWLRKGMHIITPNKKANSGPLEQYLRLRELQRQSYTHCFYEATVGAGLSIISTLRGLLETGDKIIHIEGIFSGTLSYIFNNFSGRETFSQIVTKAKEAGYTEPDPRDDLSGMDVARKVIILARECGLKLELDDIPVQNLVPEPLQRCTSVEEFMNKLPEFDHEMKKQREDADSSAEVLRYVGVVDTVANKGRVELRRYSKTHPFAQLYGSDNIIAFTTTRYHKQPLIVRGPGAGAEVTAGGVFSDILRLASYLGAPS*

Protein Length: 421

Fln nts: GAGATGGAAGTGACTTTTCTGCGGCAATCATGGGAGCCCTATTCAGAGCTAGGCGAATTACAATTTGGACAGATGTGGATGGTGTGTATAGTGCAGATCCTCGAAAAGTTAGTGAAGCTGTGATATTGAAGACACTATCTTACCAGGAAGCCTGGGAAATGTCATATTTTGGGGCAAATGTGTTGCACCCTCGGACAATAATCCCAGTTATGAAGTACAATATTCCTATTGTGATAAGAAATGTTTTCATCTATCATCTCCCGGGACAAGTATATGTCATCCTTGTATTACAGAGGCTAAAGAGCTTGAGCCATGTTCAGACTCTGATTCAATTGTAAAAGGTTTTGCAACCATTGACAATGTAGCACTTGTAAATGTTGAAGGAACTGGAATGGCTGGTGTTCCTGGTACAGCGAGTGCAATTTTTGGTTCAGTCAAAGATGTTGGTGCAAATGTTATTATGATATCACAGGCAAGTAGTGAGCACTCTGTGTGCTTTGCAGTACCAGAAAAAGAGTTGGTGCTGTTGCAGAGGCCTTAAATAAGAGATTTAGAGAAGCTCTCGATGCTGGGCGGCTTTCACAGGTTGAGGTCATTTCTGACTGCAGCATTTTGGCAGCTGTTGGACAACGC_-_ATGGCAAGTACACCTGGAGTTTGTGCCACTTTATTTAATGCACTAGCAAAGGCCAATATAAATGTTCGGGCTATTGCTCAGGGTTGCTCTGAGTACAATATTACAGTGGTTGTGAAACGAGAAGATTCAATAAGGGCCTTGAGAGCTGTACACTCAAGGTTCTATCTTTCGAAGACAACCTTGGCTGTTGGCATAATTGGACCAGGTTTGATTGGAGGAACTCTTCTGGACCAGCTTAGGGATCAGGCAGCTGTGCTTAAGGAGGAATTTAACATTGATTTACGTGTGATGGGCATCATTGGTTCTAAAACAATGGTCCTGAGTGATCTGGGCGTAGACCTACAAACATGGAGGGAGCTTGTAAAAGAAAAAGGCCAGCCTGCTGATCTAGAAATGTTTATTCAGCGAGTGCATGGAAACAACTTTATACCAAATACAGTTATTGTAGATTGCACAGCCGATCCAGGAGTTGCTACGAATTACTACCAATGGCTGCGAAAAGGAATGCATATAATTACTCCTAATAAAAAGGCAAATTCAGGACCGCTAGAGCAATACCTAAGGTTGAGGGAACTTCAAAGACAATCCTATACACACTGCTTTTATGAAGCAACTGTTGGAGCTGGTCTTTCAATAATCAGCACTTTGCGGGGCCTTTTGGAGACCGGTGATAAAATTATACACATTGAAGGCATATTCAGTGGAACTTTGAGTTATATATTTAACAATTTCTCTGGGAGAGAAACTTTTAGTCAAATTGTAACGAAGGCAAAAGAAGCTGGCTACACCGAACCAGATCCAAGAGATGATCTATCAGGCATGGATGTTGCTAGAAAGGTCATAATCCTTGCAAGGGAGTGTGGTTTAAAGCTAGAGCTTGATGATATTCCTGTTCAGAACCTTGTCCCAGAACCTTTGCAGAGGTGCACTTCTGTGGAAGAATTTATGAATAAGCTTCCAGAATTTGATCATGAAATGAAAAAGCAAAGAGAAGATGCAGATTCTAGTGCTGAGGTTCTTAGATACGTTGGAGTTGTTGATACTGTTGCTAACAAGGGTCGTGTAGAGCTGAGGAGGTATTCAAAGACACATCCATTTGCCCAACTATATGGGTCCGACAATATCATTGCATTCACAACAACAAGGTATCATAAGCAACCACTTATTGTGAGAGGCCCAGGTGCAGGGGCAGAAGTTACTGCCGGTGGAGTTTTTAGTGACATTCTACGGTTAGCCTCCTATTTGGGTGCTCCATCTTAG___TCATTATTTTGTTAGAACGAATGATTCTTCTCCTGCTGTGTTTGTTAACTACTGACTAGATTTTTATATTATAGTTAGAGTGAGATTTATATTCCTCTAGTATGTTCAATTTCTCCATGACGAGTCCTAGTTGGTTTAGATGCCTCCTATTCCTAGCTTTCCCACCTTGGATTCTAGACAGGAAAATTGAACATATACAGGTTTACAGGCAAAGGTTCGTAATGGAAAACTGGAGATTTTGCCATTACGAGCAGGGAAAGATGTAAATGGCAAGATTTGCATTAGCATAAGGAAATTTTTTTAAGACCTGGTCAAGGTTTAGGAGTCGTTCAAATTTTGTTTCATTTGAGAAGCACCGTTCCCTTGAGTATGTAATATGAAGATATGAGTAATCATCTTATGACATGGTTAACAAAAGTCCTAACTTGAATTGTGAACCTCTGGTGCCAGTTTGTTTTCTTTATTTTGGTTTCTATTTGCACTGACTTTAGAAATAAGGCAACTGGCTTGTAATATAGCAAGGACCCACCAAGGGGAGTCAGATAGAAGAGTGGATACAAGGAACTGTAATTAGCATCTCTAGATAACCTTGTTAAATGTCACAAGTGTGCTATGAACATTATTTACTGATGTTGAACCAAATCCTCACTTTTGGAATTGGACAATGGAAATCTACAGAATGTGAGTGCTTGAAATATTGTACCTACTTTTCCCAGCATCAATCTGAAAAATTTAAATAGTCTTTGAAGAAATATTTTCTGATAAAAAAAAAAAAAAAAAA

Fln Alignment:

sp_v1.1_unigene2034___VDCTADPGVATNYYQWLRKGMHIITPNKKANSGPXXXXXXXXXXXXXSYTHCFYEATVGAGLSIISTLRGLLETGDKIIHIEGIFSGTLSYIFNNFSGRETFSQIVTKAKEAGYTEPDPRDDLSGMDVARKVIILARECGLKLELDDIPVQNLVPEPL-QRCTSVEEFMNK-LPEFDHEMKKQREDADSSAEVLRYVGVVDTVANKGRVELRRYSKTHPFAQLYGSDNIIAFTTTRYHKQPLIVRGPGAGAEVTAGGVFSDILRL
D5AEG5______________VDCSASDQTVELLNKVLDLGCCVVLANKK----PLTAKIELYEKIVSNRRRLRYESTVGAGLPVISTLNRLIASGDTIQCITGALSGTLGYVMSELQGGHPLSEVVQAAKILGYTEPDPRDDLSGMDVARKALILARLLGRQINLENVEVESLYPSEMGPDDMSVEDFLNKGLPTLDEAMEERIKNAASNDNAVRYVCTIDN--SRCKVGLLELPENSPIGQLKGSDNLVEVYSRCYKALPLVIQGAGAGNDTTAAGVLADIVDL

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
713	66	33			0.997452
714			33	66	0.997452
716		33	66		0.997452
717		66	33		0.997452
719		66	33		0.997452
721		33	66		0.997452
722		33	66		0.997452
723			66	33	0.997452
725			33	66	0.997452
729		66	33		0.997452
731		33	66		0.997452
733		33	66		0.997452
735	66	33			0.997452
736	33	66			0.997452
825	28	71			1.0
826		14		85	0.993533
827		14	85		0.993533
828			14	85	0.993533
829			14	85	0.993533
836	85		14		0.993533
840		14	85		0.993533
996	80		20		0.995493
1135	14		14		0.984337
1136	14		85		0.993533
1259	66	33			0.997452
1283	66	33			0.997452
1284	66		33		0.997452
1288	66			33	0.997452
1290	33	66			0.997452
1291	66	33			0.997452
1295			33	66	0.997452
1300			66	33	0.997452
1301		33	66		0.997452
1302	33		66		0.997452
1440		66		33	0.997452
1774	87		12		0.992554
1777	87		12		0.992554
1779			12	87	0.992554
1780	12		87		0.992554
1782	87	12			0.992554
1785		87	12		0.992554
1786	87		12		0.992554
1788	87		12		0.992554
1789	87			12	0.992554
1792	87			12	0.992554
1830	85		14		0.993533
2221		14	85		0.999981
2225	85		14		0.999981
2226	85			14	0.999981
2228		14	85		0.999981
2229		14		85	0.999981
2556	14	85			0.993533
2558		85	14		0.993533
2559	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain