SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2032

Length: 1843 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2032 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RFZ3_RICCO	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	atp binding	-	-	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of flower development	GO:0009909	Biological Process	0.0	63%
Blast2go	regulation of root meristem growth	GO:0010082	Biological Process	0.0	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPN7

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 392 - 737

Fln protein: KMG**PSGYFVTE*QWRVGRNFGYPHVLEKEIVAQSPSPSRLPNVYDVRGRSRRLVLGIVLGSLTGFAAAGVVATIMRAAVIFINKVPLIKGPIVFDSRIGSKMLSFLGQESCLDEADLVGVGPNGRVYRANLENGMTVAVKRINAVESYEMMSTSVKRQIQEELEVAGRVRHRNLVALQAYVRQPNAHLLVYDLISNGSLADALKKIKDNQLQLSWPMRHKIAVGTIVGLQYLHFQCNPRVVHCDLKPANILLDDEFEPHLVDFGLGKLMPNSGAAGYVAPECYPACKYTDKSDVFSFGVVLAVLLTSKEPTDSFFDGAPRGSIGRWLRHLQQTGKAFEALDKGIIEGEGEQEEEMLMAVRIAAACLAEMPADRPSSAELVSMLTQLHSF*

Protein Length: 393

Fln nts: GAAAATGGGGTAATAACCATCTGGGTACTTCGTTACTGAGTGACAATGGCGGGTTGGGAGAAATTTTGGGTACCCACATGTTTTAGAGAAAGAAATAGTAGCACAGTCCCCGTCCCCTTCAAGGCTTCCAAATGTATATGATGTGAGAGGCAGGTCCAGAAGGTTGGTTTTGGGGATTGTCTTGGGTAGCCTGACTGGTTTTGCAGCTGCTGGGGTTGTAGCAACTATAATGAGAGCTGCTGTGATTTTTATCAACAAGGTGCCTCTGATAAAGGGTCCCATTGTCTTTGATTCTAGGATTGGTTCCAAGATGCTGTCATTTTTAGGGCAGGAGAGTTGTCTGGATGAAGCAGACCTTGTTGGGGTCGGTCCCAATGGAAGGGTTTACAGAGCCAATCTAGAAAATGGAATGACTGTTGCCGTGAAAAGGATTAATGCTGTGGAATCTTATGAAATGATGAGTACTTCTGTCAAGAGGCAGATTCAGGAGGAGTTGGAGGTTGCAGGCAGAGTGAGGCATAGAAATCTTGTCGCGTTGCAAGCTTATGTTCGACAACCCAATGCCCATTTATTAGTTTACGACCTCATTTCCAATGGGAGCCTTGCAGACGCTCTGAAGAAAATCAAGGATAACCAGCTGCAGCTGAGCTGGCCAATGCGGCATAAAATTGCAGTTGGCACAATAGTGGGTCTTCAGTATCTTCATTTCCAGTGCAATCCCCGTGTTGTACACTGTGATCTCAAGCCTGCAAATATTCTTCTTGATGATGAATTTGAACCCCATTTGGTTGATTTTGGGTTGGGTAAGCTTATGCCAAACAGTGGCGCAGCAGGGTATGTTGCTCCTGAATGTTATCCGGCATGCAAGTATACAGACAAGAGTGATGTGTTCAGCTTTGGGGTGGTTTTAGCTGTTTTGCTGACCAGTAAAGAACCTACAGATAGTTTCTTTGATGGGGCTCCACGGGGTAGTATTGGTCGATGGCTGCGGCATCTTCAACAAACTGGAAAAGCCTTTGAAGCTCTTGATAAAGGGATTATTGAAGGGGAGGGAGAACAAGAAGAGGAGATGCTCATGGCAGTGAGGATTGCTGCAGCGTGCCTTGCAGAGATGCCTGCTGATCGCCCATCTAGTGCAGAATTGGTCTCCATGCTTACCCAATTGCACAGTTTCTAG___TAGATTCAGCTTTTAGGTTGTTTTGGCTGTTCCACTGACTGGTAAAAGGACTCACAGAGTGTTTTTCTTATGAAGCTCTGTGTTGTGTAGTATTGGACACAGGCTATGGCATTTTGAACAGAAGGGAATGGCCGATCAAGCTCTTGATAAAAGGCTTATCCAAGGAGAAATAAAGCAAGAAAAAGAGATGCTAAAGGCATTGAGGATTGCTGCTGGATGACTTACACAGATGCCTGTGTATTGCCCATCTAGGACAGAATTGGCTTCCGTGTTTTTATTCAACTGCATGTTCTCTAGTGTGGTCATTCTACTTCATCTTCCTGGCATCTGAATTTAAGGTTTGTTTGTTCTGCTGCTTGACATTGTTAATTTCCATGTAATAGAAATGAGGTTTTCTAGTTAGAGCTTAAGATGAAACTGGTCAATAATGTCCTCTCTGACTCAGTTTTCTCATATTTTATTCCTCTTAGTTTTGTGAACTTCTGTGTATACTATAGCATGCGAATCATCATTCTTTCCTTTTGGAAAGTTATTTTCTGATTCCTTTATTTAAGTTATTTTGAAGATTGTGAGATATCCTCTCATATTCTCAGATATTTGGATGTGTTGTATTCTAAACTTTTAACTGCAATATTGACCATGTTCAGTCTTTTAGATGCTGCTACG

Fln Alignment:

sp_v1.1_unigene2032___AQSPSPSRLPNVYDVRGRSR-RLVLGIVLGSLTGFAAAGVVATIMRAAVIFINKVPLIKGPIVFDSRIG-SKMLSFLGQESCLDEADLVGVGPNGRVYRANLENGMTVAVKRINAV--------ESYEMMSTSVKRQIQEELEVAGRVRHRNLVALQAYVRQPNAHLLVYDLISNGSLADALKKIKDNQLQLSWPMRHKIAVGTIVGLQYLHFQCNPRVVHCDLKPANILLDDEFEPHLVDFGLGKLMPN----------SGAAGYVAPECYPACKYTDKSDVFSFGVVLAVLLTSKEPTDSFFDGAPRGSIGRWLRHLQQTGKAFEALDKXXXXXXXXXXXEMLMAVRIAAACLAEMPADRPSSAELVSMLTQLHS
C0PPN7______________SEAPAPQLQENSHKKKHNSKERWAFGMIVGIVMGAISAFVFSFLFRMFLFYIRERPKVQGAVIYSPLIKKTEDLAFLETDEGLLSGEPIGRGGSGEVYRARLPYGKEIAIKRIHQVTPNQSDLTEEDTKLLDKRRRQIRSELETLGQIRHRNLVALLAYVARPDCHLLVYEYMKNGSLQQALTRVRDGTLELAWPIRHKIALGIASGLQYLHYNSTPKIIHRDLKPGNILLDEDFEARIADFGLAKALPEAATHASSSNVAGTVGYIAPEYHQTLKFTIKCDVYSFGVVLAFLVTGKEPSHDFFQEISQASVPIWLRSIVNSEKASQAID--PSLVGKGYEDQILLVLKIACFCTDDDPRKRPTSRDVFTMLTQINN

SNPs (tot: 7)

Position	A %	C %	T %	Probability
594		33	66	0.997452
799	14	85		0.993533
824		16	83	0.994512
825		16	83	0.994512
828	83		16	0.994512
1012	25	75		0.996473
1341		75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain