SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2024

Length: 1819 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2024 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter, subfamily C, member 5, SmABCC5 n=2 Tax=Selaginella moellendorffii RepID=D8REF1_SELML	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	63%
Blast2go	multidrug resistance protein abc transporter family	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	88%
Blast2go	cellular potassium ion homeostasis	GO:0030007	Biological Process	88%
Blast2go	sulfonylurea receptor activity	GO:0008281	Molecular Function	88%
Blast2go	catalytic activity	GO:0003824	Molecular Function	88%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ABC transporter-like	IPR003439	-	0.0	88%
Blast2go	AAA+ ATPase domain	IPR003593	-	0.0	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSU0

Fln msg: your sequence is longer than subject: 314 - 131

Fln protein: MAGLAVTYGLTLNARQSRWILSLCKLENKIISIERIQQYSRIPSEAPLVVENCRPPPSWPFKGTVEIVNLQVRYKENLPKVLHGIICTFPGGKKIGIVGRTGSGKSTLIQALFRMVEPIDGKIIIDGIDISTIGLYDLRSRLGIIPQDPTLFEGTIRVNLDPLEEHSDSEIWEALDKCQLGDIVREKDQKLDSAVTENGENWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDGVIQRTIRAEFGDCTVISIAHRIPTVIDSDLVLVLSDGKVAEFDTPVSLLEDKSSLFLKLVSEYSLRSTSVPEMVT*

Protein Length: 315

Fln nts: CGTCGTGACCTTGGCTGTACCATTGATCCGAGT_-_ATGGCTGGTCTTGCAGTGACATATGGTCTTACTTTGAATGCCAGACAGTCTCGCTGGATTTTGAGTCTATGTAAACTGGAAAATAAAATTATTTCAATTGAGCGGATTCAGCAGTATTCACGAATTCCGAGTGAGGCTCCCTTAGTTGTGGAGAACTGTCGGCCTCCACCTTCTTGGCCATTCAAGGGAACTGTTGAGATAGTAAATTTACAGGTGCGGTACAAAGAAAATCTTCCAAAGGTTCTCCATGGAATAATATGCACCTTTCCTGGAGGGAAGAAAATTGGGATAGTGGGTCGGACAGGCAGTGGGAAATCAACTTTAATTCAAGCACTGTTCCGAATGGTGGAGCCCATTGATGGAAAAATTATAATTGACGGCATAGATATATCAACCATAGGCCTGTATGATCTGCGCTCACGTCTGGGTATTATTCCACAGGATCCAACTTTGTTCGAGGGGACAATCCGTGTGAATCTAGATCCTCTTGAAGAACATTCGGACTCTGAAATCTGGGAGGCACTTGACAAGTGTCAGCTAGGAGATATTGTCAGGGAAAAAGATCAAAAGCTTGATAGTGCGGTGACTGAGAATGGAGAAAATTGGAGTGTGGGGCAGAGGCAACTTGTGTCATTGGGTAGGGCATTGTTGAAACAAGCACGTATATTGGTGCTTGATGAAGCAACAGCATCAGTAGATACAGCAACTGATGGTGTCATTCAGCGAACAATCCGTGCTGAGTTCGGTGATTGCACTGTCATCTCTATTGCGCATCGTATTCCAACTGTGATTGATAGTGATCTAGTTCTGGTTCTTAGTGATGGAAAAGTAGCAGAATTTGATACCCCAGTAAGTCTTCTAGAGGATAAGTCATCCTTATTTTTGAAGCTTGTGTCAGAGTACTCGCTGAGGTCAACTAGTGTTCCTGAGATGGTAACCTGA___ACTAGGCATGGAAGTGTGAATAACAAGGTCGGCTGAAGGAACACCTAAAAAGCTTGGCTTTTATGGTTCAATCACCAAAAAGGTGTACCGGGAGGGCCTTCTTGTTCAGGGAGGTCGGTGATTCCATTTGGCTCTTGAAGTATTAATCATACATGTCTGCAATTCTTTATGGTGAACTGGGAATAAAAGCTCAAAATAAATCTCTTCCAGTTTCTGAAGGCGAATGCAAACTAATGCAAGGGAATCAAGTATGGGCTATCACTGACAAGCACTTGGTTGCAGGACATAATTCTATGTTCCGTTTCCAATGCTTTGATGGCATTTTGGCCTCTTATGTAACCCGAAAGTACGTGTTCATCATGAAGCACAGTTGTCTTGCTTGCATCACTATTGTGGCAATGCTCTGTAGCTCTCCACATCTTTGAAGAATATCTTTGAATACGAGCCAAAATTGCTAGATTGTTGTTATAGAATTGAGGAACTGTAAAGGTAATTTTATTACTATGTGCGAAGTCAGGCCATTTTTCTCGGCTGAAATGTTGTTCTATGATGACATTGGATAATCTAAATTCTCATTTAATTCCGAGGTTAGCAAGGGACTTGTGTCCTGTTTCTAGAATTTATTTTTCCTGGTTTATGTTTGCTGAAGATGGAGATTATTCAGACATGGGTGTTCTGAAAATTTGAAATTGTGAGTCAAAAATCACAAATTCAAATTGAATTTTCTTGATTCAACAACCTCAGATATTTCATTTTTATATTGTAATATTATTGGAAAAACAGGAAAGTATGAAACAGTTATCCAGGATGATTCCATTAATGATGAATTAAGAGATTTTGGTTC

Fln Alignment:

sp_v1.1_unigene2024___LGDIVREKDQKLDSAVTENGENWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDGVIQRTIRAEFGDCTVISIAHRIPTVIDSDLVLVLSDGKVAEFDTPVSLLEDKSSLFLKLVSEY
A9NSU0______________MGKSIEDLPNQLDSSVSDEGENWSAGQRQLLCLGRVLLRRNRILVLDEATASIDSATDALLQKVIRHEFSNCTVITIAHRVPTVIDSDMVLTLSDGKLAEYDNPAKLMENKSSLFAKLVAEY

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1224	20		80		0.995493
1225	20	80			0.995493
1226			25	75	0.996473
1227		25		75	0.996473
1235	25			75	0.996473
1236			25	75	0.996473
1238			25	75	0.996473
1240		75	25		0.996473
1241		80	20		0.995493
1259		25		75	0.996473
1411		33		66	0.997452
1585		12		87	0.992554
1586	87	12			0.992554
1587	87	12			0.992554
1696	85	14			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain