SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2013

Length: 1685 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2013

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pectate lyase PL1-like	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	pectate lyase	-	-	84%

Source	InterPros	Term	Type	Identity
Blast2go	Pectate lyase/Amb allergen	IPR002022	-	84%
Blast2go	Pectin lyase fold/virulence factor	IPR011050	-	84%
Blast2go	Pectin lyase fold	IPR012334	-	84%
Blast2go	AmbAllergen	IPR018082	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ36

Fln msg:

Fln protein: MYNRSILTCIVLIGILCFHGGAATRSFGSLVAQDSRRRNEAAPAKANVTTTAWEKDPDSVVQMVQRSIDNSTARRELAYLSCGTGNPIDDCWRCDPEWDRNRKRLADCGIGFGRNAIGGKNGRFYRVTDPNDYDAVNPRPGTLRHAVIQTEPLWIVFERDMVITLKEELIMNSFKTIDGRGVNVHIANGPCITVQYVTNIIIHGIHVHDCKPAGNAMVRDSPTHYGWRTMCDGDGISIFGGSHIWVDHVSLSNCADGLIDAIMGSTAITVSNSYFTHHNEVMLLGHSDSYTPDVNMQVTIAFNHFGEGLRQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFSAPADPFAKEVTKREDNNENEWRQWNWRSEGDMLLNGAFFVSSGAGAASAYAKASSLGARPSSLVQPLTATAGVLTCRRGVRC*

Protein Length: 436

Fln nts: ATCCATTAATGCTCAAATCTGTGCGGTCTATAAGAACAAGACCGGCAAGCCTGCTGCACCACGACTGAGAGTTCAGAGGCAACTACCACTTCTGTCGGCCACGCATCCGAACCTTCTCTTTTCCCTTTCCCATTCCCAAGCTCTGCTACTGCAAGAGCACTGGGAATGCTTTTTCTCCTACTTTCCATTGTTTCTGTTACTACATTCATGTCGCTTGGGAGTGTTTAGAGCTGAAGCATTGAACTCTCTTTAACAAAAGATTTTGCAATTACTGTTTGCTTTGAGTACAGAGACCGGATCTGGTCCTAAATTTGTAACTAGTGAGTTTTGGGTGTTTACAAAG_-_ATGTACAATCGGAGTATCTTGACCTGCATTGTCTTGATTGGAATCCTCTGCTTCCATGGTGGGGCGGCAACAAGGTCATTTGGCTCTCTGGTTGCACAGGATTCGAGGAGGCGGAATGAAGCAGCTCCCGCCAAAGCCAATGTCACTACTACTGCTTGGGAAAAAGATCCAGACAGCGTAGTGCAGATGGTTCAAAGAAGCATTGACAACAGCACCGCAAGGCGGGAGCTGGCCTACCTGTCATGCGGGACTGGTAACCCCATTGATGATTGCTGGCGTTGTGACCCCGAGTGGGACCGTAACAGAAAACGTCTGGCAGACTGCGGCATTGGCTTCGGCAGGAATGCTATTGGAGGCAAGAATGGGAGGTTTTACCGGGTCACGGATCCCAACGATTACGATGCTGTGAACCCGAGACCGGGCACTCTGCGTCATGCCGTGATTCAAACAGAGCCTCTCTGGATCGTCTTCGAGAGAGACATGGTGATCACACTGAAGGAGGAGCTGATCATGAACAGTTTCAAGACAATTGACGGAAGGGGCGTCAATGTCCACATTGCAAACGGGCCCTGCATCACTGTTCAGTATGTGACTAACATCATTATACATGGCATTCACGTTCATGATTGTAAGCCTGCAGGAAATGCTATGGTAAGGGACTCTCCCACGCATTATGGGTGGAGAACTATGTGCGATGGAGATGGAATCTCCATCTTTGGAGGAAGCCACATTTGGGTGGACCATGTCTCCTTGTCCAACTGTGCTGACGGTCTCATTGACGCCATCATGGGATCCACTGCTATTACCGTTTCAAACAGCTATTTCACTCACCACAATGAGGTGATGTTGTTGGGTCACAGTGATAGCTATACTCCCGATGTCAACATGCAGGTCACGATTGCATTTAATCATTTTGGGGAAGGTCTTAGGCAGAGAATGCCCAGGTGCAGGCATGGATACTTCCATGTGGTAAACAATGACTACACTCACTGGGAAATGTACGCAATTGGGGGCAGTGCAAACCCCACAATCAACAGTCAAGGCAATAGATTCTCGGCACCTGCAGACCCCTTTGCCAAAGAGGTAACAAAGAGGGAAGACAACAATGAGAATGAATGGAGACAGTGGAACTGGAGATCGGAAGGAGATATGCTGCTGAACGGTGCATTTTTTGTTTCATCGGGAGCAGGGGCGGCCTCAGCGTATGCAAAAGCATCGAGTCTGGGAGCCAGGCCCTCCAGCCTCGTCCAACCGCTTACCGCGACTGCAGGTGTACTCACTTGCAGGAGAGGAGTTCGCTGCTAA___CACCCTCAACTACTAACCCATTTGCTGACCCACCAAG

Fln Alignment:

sp_v1.1_unigene2013___MYNRSILTCIVLIGILCFHGGAATRSFGSLVAQDSRRRNEAAPAKANVTTTAWEKDPDSVVQMVQRSIDNSTARRELAYLSCGTGNPIDDCWRCDPEWDRNRKRLADCGIGFGRNAIGGKNGRFYRVTDPNDYDAVNPRPGTLRHAVIQTEPLWIVFERDMVITLKEELIMNSFKTIDGRGVNVHIANGPCITVQYVTNIIIHGIHVHDCKPAGNAMVRDSPTHYGWRTMCDGDGISIFGGSHIWVDHVSLSNCADGLIDAIMGSTAITVSNSYFTHHNEVMLLGHSDSYTPDVNMQVTIAFNHFGEGLRQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFSAPADPFAKEVTKXXXXXXXXXXXXXXXSEGDMLLNXXXXXXXXXXXXXXXXXXXXXXXRPSSLVQPLTATAGVLTCRRGVRC
B8LQ36______________MKKQSILSCMLLIGILCIHSGAAEKPFGSLFAENSREAGLA-------NTTAVEEDPESVVQMVQRSIDNSTRRRELGYLSCGTGNPIDDCWRCDPNWERNRKRLADCAIGFGRDALGGKHGSFYLVTDPNDYDAVNPRPGTLRHAVIQTEPLWIIFKRDMVIQLKEELIMNSYKTIDGRGVNVHIANGPCITVQYVSHIIIHGIHVHDCKPQGNAMVRDSPTHYEWRT-SDGDGISIFGGSHVWVDHVSLSNCADGLIDATMGSTAITISNSYFTHHNEVMLLGHSDSHTSDVKMRVTVAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPANPLAKEVTKRINQDVGEWKEWNWRSNGDMMLNGAYFTPSGAGESSAYIRASSLPARPSSLVGPLTQNAGVLFCRKGGRC

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
686	87		12		0.992554
714			12	87	0.992554
940	90		10		0.90298
1351	13			86	0.999973
1409	85			14	0.993533
1410	14		85		0.993533
1412		85		14	0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain