SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2000

Length: 1411 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2000

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable adenylate kinase 2, chloroplastic n=2 Tax=Arabidopsis RepID=KADC2_ARATH	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	adenylate kinase	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	83%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	83%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZC8

Fln msg: your sequence is longer than subject: 312 - 174

Fln protein: MMAGLSIVNNVPLQSNRAPSASFSCSPISTTSSPCCFSAGAALPFRESSRNQVLRIGDVTRGNRVGGAKVLCTRKRGAVIPMAMAKRKPLKIMISGAPASGKGTQSELIVKKYGLAHIAAGDLLRAEVASGTENGIRAKEYMEKGSLVPNDIVVMMVKERLSQQDAQENGWLLDGYPRSLSQAAALDSLGIRPDLFILLDVPDEILVERVVGRRLDPVTGKIYHLKYSPPETEEIAQRLTQRFDDTEEKVKLRLKTHHKNLEDVLSNYTNLIWKVDGNRPKEQVFAEIDAAVAELERKQTEVKEKAAMGGN*

Protein Length: 313

Fln nts: CGTCGTGACCTTGGCTGTCATTGGGGTTTTTGTCTTTATTTATCCCTTCCCATATTCAGGATTGTATAACTGCGAAAGCTCAAGTTTAAATGCCCATACATGGTCTGAATCCAGACAATTCCAGTGGAGGAGAAGTGTGTTAGCAGCTGGGCAGTTAACTTGTTCA_-_ATGATGGCCGGCCTGAGCATAGTTAATAACGTGCCATTGCAGTCGAACCGGGCGCCATCGGCTTCTTTCTCATGTTCCCCGATTTCGACTACTTCATCACCATGCTGCTTCTCAGCAGGGGCGGCGCTTCCTTTTCGGGAATCTTCACGGAACCAGGTGCTCAGAATTGGAGACGTTACTAGGGGTAACAGAGTAGGAGGAGCTAAGGTGCTTTGTACCAGGAAGAGGGGCGCTGTAATACCAATGGCCATGGCGAAACGAAAGCCGTTGAAGATTATGATCTCTGGGGCGCCTGCCTCTGGTAAAGGGACGCAATCTGAACTCATCGTGAAAAAGTATGGGTTGGCACATATTGCTGCTGGAGACTTGCTGAGAGCAGAAGTTGCATCAGGCACAGAGAATGGGATAAGAGCAAAAGAGTATATGGAAAAAGGTTCTTTGGTTCCTAATGATATTGTTGTCATGATGGTGAAGGAGCGACTATCACAACAGGATGCACAAGAAAATGGGTGGCTACTTGATGGATACCCTCGAAGCTTGTCACAAGCAGCTGCTCTTGACAGTCTTGGCATCAGGCCAGATCTCTTTATTCTCTTAGATGTCCCTGATGAAATCCTTGTGGAGAGAGTTGTTGGAAGGAGACTTGATCCTGTGACAGGAAAAATTTACCACCTGAAATATTCTCCACCAGAGACAGAAGAAATTGCACAGAGACTAACTCAACGTTTTGATGACACTGAGGAGAAGGTCAAGTTACGGTTGAAAACACATCATAAGAATTTGGAAGATGTGCTTTCTAATTATACAAATCTAATTTGGAAGGTTGACGGGAATCGTCCCAAAGAACAAGTGTTTGCAGAGATTGATGCAGCTGTAGCTGAACTTGAAAGAAAACAAACAGAAGTCAAAGAAAAAGCGGCGATGGGTGGCAATTAA___TGTATGGTGTCAAATGCATGACGTGCATAGAGTGATTGTTATTATTCAAATTTTGAACTTTAACATTTGTAATAATATTAAAACCATTTGTTTAGAAAGGAATTCTCTATTCTAAAGGCTACGAGGTGGATAAATTCAATTAAGGTATGGATGCATAGGGATCTATGTTTTACGTTAGATTTTAGTGCATTGGGCACTTATCCTGCAAACTTTACCTCTAAGCTCTTTGGCTCAGTGAAATATATTGAAAAGTCATGTACTCCAGATAGAGTTAAGCATCCTACATATGAAGTAAATTTACTGTATTTA

Fln Alignment:

sp_v1.1_unigene2000___MEKGSLVPNDIVVMMVKERLSQQDAQENGWLLDGYPRSLSQAAALDSLGIRPDLFILLDVPDEILVERVVGRRLDPVTGKIYHLKYSPPETEEIAQRLTQRFDDTEEKVKLRLKTHHKNLEDVLSNYTNLIWKVDGNRPKEQVFAEIDAAVAE----LERKQTEVKEKAAMGGN
A9NZC8______________MEKGSLVPNDIVVMMVKERLAQQDAQENGWLLDGYPRSLSQAAALDSLGIRPDLFILLDVPDEILVERVVGRRLDPVTGKIYHLKYSPPETEEIARRLTQRFDDTEEKVKLRLKTHHKNLEDVLSNFTNLIWKVDGNRPKEQVFAEIDAAIAELERKLERKQTEVKAKAATSGN

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
645		66		33	0.997452
670	75		25		0.996473
950		16	83		0.999991
952	83			16	0.999991
953	83	16			0.999991
958	16			83	0.999991
959		16	83		0.999991
963			18	81	0.999994
967	81		18		0.999994
969		18		81	0.999994
971		18		81	0.999994
972	81			18	0.999994
1224	61			38	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain