SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1979

Length: 1937 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1979

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubby-like protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SPK2_PHYPA	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	tubby-like protein	-	-	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUX5

Fln msg:

Fln protein: MTVKNIFQDMKGSIGSISRRSFEVKFLRSRSQSAADDLHYRSNANNKNNSNNGGLQCSLWANMPPELIRDVIQRIEESESSWPCRKSVAACAGVCMTWRQITKELVPIPELSGKLTFPISLKQPGSREPSVQCFIKRDRATSTYQLFLCLNTTLSENGKFLLAARKFRRATSTEYIISLNADDMSRGSNTYVGKLRSNFLGTKFTIYDSQPPHSGAIASTSRAGRRVGAKQVSPRVPAGSYNIAHIGYELNVLGTRGPRRMQCIMHSIPASAVQPGGSAPTPVEPSVTSLDQSLASCPTFGSKSCILESSSISEPLTGSNLKDEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAPEPNPSVSQNDCDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE*

Protein Length: 420

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTGTAAGGTCTGCCATGGCGATTCCAGTACCTCAAAATGGATGGAATCTGTACAGAAATAGCCTCTAGCGACGGCAGAGTCGTCAGAGATTCCTCTTTTGGGTATCCTAAAATCTCGAAATCCAGCCGCTTTGTTAAGAATTCGGCCATGAACGACCGCCTGTAGCGCATAACCAGGGTTTCAACGAGGCCGGCAGTGCTATATTTGTTATTTTTATTATTTCTAACATCATTACT_-_ATGACCGTGAAAAACATTTTTCAGGACATGAAAGGCAGTATCGGGAGCATCTCCAGGCGGAGCTTTGAAGTAAAGTTCCTTAGATCTCGTTCACAGAGTGCTGCGGACGATTTACATTATAGAAGCAATGCGAATAATAAGAATAATAGTAATAATGGAGGCTTGCAGTGCAGTTTGTGGGCGAATATGCCCCCTGAGTTGATAAGAGATGTTATTCAGAGAATTGAGGAGAGCGAGAGCAGTTGGCCTTGCAGGAAGAGTGTGGCGGCATGTGCTGGGGTTTGTATGACATGGAGACAAATTACAAAGGAGCTTGTTCCGATACCTGAGCTGTCTGGGAAGCTTACCTTCCCCATTTCTTTGAAGCAGCCTGGATCAAGGGAGCCCTCTGTACAGTGTTTCATCAAGCGAGATAGGGCTACATCTACCTATCAATTGTTTCTCTGTCTGAATACAACACTTTCTGAAAATGGAAAATTTCTTCTTGCGGCCCGGAAATTCAGGCGGGCTACAAGTACAGAGTATATTATTTCTCTTAATGCAGACGATATGTCAAGGGGTAGCAATACATATGTTGGAAAATTGAGGTCAAACTTTCTTGGTACTAAGTTTACAATATATGATAGCCAACCTCCTCACAGTGGGGCAATTGCATCAACAAGCCGTGCAGGTCGACGGGTAGGAGCAAAGCAAGTTTCTCCAAGAGTTCCAGCTGGTAGCTATAATATTGCTCACATTGGCTATGAATTGAATGTCTTGGGAACTAGGGGTCCAAGACGGATGCAATGCATCATGCATTCTATTCCAGCTTCTGCTGTGCAGCCAGGAGGCAGTGCTCCAACTCCTGTTGAACCTTCGGTCACCAGTCTAGACCAGTCTCTTGCATCTTGTCCTACTTTTGGCTCCAAGTCGTGCATTTTAGAAAGTTCATCTATCTCTGAGCCACTTACCGGTAGCAACTTGAAAGATGAACCATTGGTTTTAAAAAATAAAGCGCCAAGGTGGCATGAGCAGCTTCAATGTTGGTGTTTGAATTTCAAGGGGCGTGTGACTGTGGCTTCTGTTAAGAATTTTCAGCTTGTTGCAGCACCTGAGCCTAATCCGTCGGTTTCTCAGAATGATTGTGATAAGGTCATACTCCAATTTGGAAAGGTTGGAAAGGACATGTTCACAATGGATTATCGCTACCCGCTCTCAGCTTTTCAAGCTTTTGCCATATGCCTTAGTAGTTTTGACACAAAACTTGCTTGTGAATAG___GGGAAGATCAGTCAGTTTGTTGACAGATAGGCTGAGGTTGATGCAATATAGTTACTTAAAAGTCTGAAGTTTGGGTCGTATTTTGTATAATCATCAGTGTTTCATGGTGTTTAGCTACTAGTTACCACAATTTATAACGCTCATGAGCTTGGTGATTTAGAAATAAGGTAGGCAGGCTTCTGCTACCCCTAGTTGATGCCTTTATGTACCAGTAGCAACTGAAGGTAGCATATACTGTTGATGTATGAGGAGCCACCAGTCAGTTTCATGTGGAGGTGTTTGGCATATTCTGTATTACTGTACATAGTTGGTTTTGTACATTTCCAGGAATGCAAGGTCTATTTATTTATTGAAGGATACATCATTGGTTCAAGCTCAGAAGATATTATGATTAATGCTGGCATCTCTAGAATATG

Fln Alignment:

sp_v1.1_unigene1979___MTVKNIFQDMKGSIGSISRRSFEVKFLRSRSQSAADDLHYRXXXXXXXXXXXGGLQCSLWANMPPELIRDVIQRIEESESSWPCRKSVAACAGVCMTWRQITKELVPIPELSGKLTFPISLKQPGSREPSVQCFIKRDRATSTYQLFLCLNTTLSENGKFLLAARKFRRATSTEYIISLNADDMSRGSNTYVGKLRSNFLGTKFTIYDSQPPHSGAIASTSRAGRRVGAKQVSPRVPAGSYNIAHIGYELNVLGTRGPRRMQCIMHSIPASAVQPGGSAPTPVEPSVTSLDQSLASCPTFGXXXXXXXXXXXXXPLTGSNLKDEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAPEPNPSVSQNDCDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
A9NUX5______________MTVKNIFQDMKGSIGSISRRSFEVKFLRSRSQSAVDDLHYRSNANNKNNSNNGGLQCSLWVNMPPELIRDVIQRIEESESSWPLRKSVVACAGVCRTWRQITKELVKIPEMSGKLTFPISLKQPGSRDPSVQCFIKRDRATSTYQLYLSLTPTLSDNGKFLLAARKFRRATSTEYIISLDAEDMSRGSNTYVGKLRSNFLGTKFTIYDSQPPHSGAIASTSRAGRRVGAKQVSPRVPAGSYNIAHIGYELNVLGTRGPRRMQCIMHSIPASAVQPGGSAPTPVEPSITSLDHSLASCPTFGSKSCILESPSISEPLTNSNSKDEPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAPEPNPSVSQNDYDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
970		20	80		0.999996
971		20		80	0.999996
974		80		20	0.999996
975	80		20		0.999996
982	80	20			0.999996
983	20		80		0.999996
987		20		80	0.999996
1215	30	70			1.0
1701	10			89	0.999919
1893		16		83	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain