SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1973

Length: 1989 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1973
GCAAAATAACCACGCTCGTTTCAGTGTACCTCTCCGACAACAAAATCCAAGCTGTTACGGATTCAATTGCTGGTCTTGTAAACCTGGAAACACTGGATTTGAGTGGCAACGTCCTGGTCTCTCTGCCAGATTCACTTGGACTTCTGAAAAGATTAAAATTCTTGAATGTTTCAGGAAATAAACTAAAATGTTTACCAGATAGCATTTCAATGTGCAGTGAGTTGATTGAGCTGGATGCCAGCTACAACCAGTTGATCTATTTGCCAACCAACTTCGGTTATCAGCTTGCCAACCTCCAGAAACTATTGGTTCAATTAAACAAGTTAAGGTCTTTGCCGTCTTCTTTCTGTGAACTGAAATCTCTAAGGTACTTGGACGTTCATTTCAATGAGCTACGATCTTTACCAGATGCCCTTGGAGACTTGAAAAATCTTGAGGTCCTGAATGCTAGCAGCAACTTCAGTGATTTAGTAAGTTTACCAGAATCAATTGGTGAATTAACAAACCTTGTTGAGTTGGATGTCAGCAACAATCAAATCAAGGAACTGCCATATTCATTTGGAAGTTTACAGAATTTGAAGAAGCTCAACCTGGATCAAAACCCCCTCATGACACCACCAAATGAGATTGTTGTACAGGGTGTGGAGGCTGTAAAGGAGTACATGGCCAAAAGATGGTTGGATTATTTGCTGGAAGAGGAACAAAAAAGCATGTCAGCCACTAGCAATAATCAAACAAATAATGGTTGGGTGCAATGGGGCGGTTCTGTGCTTGGAGGTTTGATTTCAGGAACGAAGGAAAGCATCAGAGGATATCTAGGGGCACCAAACAAACGTCAACTGGATCCTTACCTGGAACAGCAGTACTGAATTACTTGCCCATTAACACTTTTAATAGTTTTTATACCATGCAACTTTGCATATTAACTAGTTCTTTCTTTCTCACAGTTCTACTGTTGAGAAGACAGGAGGATAGAATCGTTTTGGGATCTACTCAATTCACCAATGTGTTTGCATCTGATTTCCAGAGTGAGGTAGAATTAACTTGTGGTGCTTGATATAGCATGCAGCTTGAATTCAGAATTTACATTTGCTCATGCAAGCAGACAAAAATGATCTTTGGGTGTTCTAGGCCATGCACATGTATACTGAAACAATATATGTATGCATTGCGAGGAAGTAGTAGGATATGATGCCCAATGACTACCCAGTCAATGCATGCACAATAGGTCTAATGACCGCCTGAATCTCCTGCCATTAACTTGTGCTTGGGTTAGCCTTGTCAACGATTAATAAGGAGTGCTGATTGACAGTTTGATCTTCAATGGGGATCTAAGGCGTCCATGATCTTAAAAATTGTTCATATTTGGTTAAAGTTGCAGGTCAAGTGAGTGTAGGATCAATGAATCGTGCTTTTGGGCAGCTAATGTTGAATATTTTGAATTAGGTTTTTTGAGAAAACGGGTTAGTAGTAGAGATAAATAGGGAAAACCAAAATTAGGGTCTTTGCAATGACTTTCACCTAATTGAGTTATATTTGATTCAGGAGCTTTGTAGTTGGAATAATTTTCCTGCAGTCTTTATTATTCTACTCAAGAAATCTTCACAAACAATGGTAATGCGAAAGCATTGATCTACCTCTTGGGAGGAACACGCAATCGCTGCGTTCATCTTTATCATTCTCTGGAACCGTTGTATTAGAACAGTGCTCTAGCTTATGGAAGCAGTTTGGTTTCTAAGCACAACTGTTTCTTTCTGTGAGAGGATAACTGCAACATCAGTTTTTCAGTCGGTTGTAGATACTAATTCAGCAGGTATAGTGGAATTATGAACGTTTTGTATTATGTTGTAGATACTAATTCAGCAGGTATAGTGGAATTATGAACGTTTTGTACTATGTTGCAGAAATAATCAAAGCAATGTAAAGGTGTTCTGGACTTAATATTCTCTTGTGGGATTTTATCTTTTGACTCGTTATACAAGTCAGACC

Ace file of the UniGene sp_v1.1_unigene1973

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Leucine-rich repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SVK7_RICCO	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	leucine-rich repeat family protein	-	-	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	72%
Blast2go	Leucine-rich repeat, typical subtype	IPR003591	-	0.0	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQU6

Fln msg: your sequence is shorter than subject: 289 - 524

Fln protein: KITTLVSVYLSDNKIQAVTDSIAGLVNLETLDLSGNVLVSLPDSLGLLKRLKFLNVSGNKLKCLPDSISMCSELIELDASYNQLIYLPTNFGYQLANLQKLLVQLNKLRSLPSSFCELKSLRYLDVHFNELRSLPDALGDLKNLEVLNASSNFSDLVSLPESIGELTNLVELDVSNNQIKELPYSFGSLQNLKKLNLDQNPLMTPPNEIVVQGVEAVKEYMAKRWLDYLLEEEQKSMSATSNNQTNNGWVQWGGSVLGGLISGTKESIRGYLGAPNKRQLDPYLEQQY*

Protein Length: 290

Fln nts: GCAAAATAACCACGCTCGTTTCAGTGTACCTCTCCGACAACAAAATCCAAGCTGTTACGGATTCAATTGCTGGTCTTGTAAACCTGGAAACACTGGATTTGAGTGGCAACGTCCTGGTCTCTCTGCCAGATTCACTTGGACTTCTGAAAAGATTAAAATTCTTGAATGTTTCAGGAAATAAACTAAAATGTTTACCAGATAGCATTTCAATGTGCAGTGAGTTGATTGAGCTGGATGCCAGCTACAACCAGTTGATCTATTTGCCAACCAACTTCGGTTATCAGCTTGCCAACCTCCAGAAACTATTGGTTCAATTAAACAAGTTAAGGTCTTTGCCGTCTTCTTTCTGTGAACTGAAATCTCTAAGGTACTTGGACGTTCATTTCAATGAGCTACGATCTTTACCAGATGCCCTTGGAGACTTGAAAAATCTTGAGGTCCTGAATGCTAGCAGCAACTTCAGTGATTTAGTAAGTTTACCAGAATCAATTGGTGAATTAACAAACCTTGTTGAGTTGGATGTCAGCAACAATCAAATCAAGGAACTGCCATATTCATTTGGAAGTTTACAGAATTTGAAGAAGCTCAACCTGGATCAAAACCCCCTCATGACACCACCAAATGAGATTGTTGTACAGGGTGTGGAGGCTGTAAAGGAGTACATGGCCAAAAGATGGTTGGATTATTTGCTGGAAGAGGAACAAAAAAGCATGTCAGCCACTAGCAATAATCAAACAAATAATGGTTGGGTGCAATGGGGCGGTTCTGTGCTTGGAGGTTTGATTTCAGGAACGAAGGAAAGCATCAGAGGATATCTAGGGGCACCAAACAAACGTCAACTGGATCCTTACCTGGAACAGCAGTACTGA___ATTACTTGCCCATTAACACTTTTAATAGTTTTTATACCATGCAACTTTGCATATTAACTAGTTCTTTCTTTCTCACAGTTCTACTGTTGAGAAGACAGGAGGATAGAATCGTTTTGGGATCTACTCAATTCACCAATGTGTTTGCATCTGATTTCCAGAGTGAGGTAGAATTAACTTGTGGTGCTTGATATAGCATGCAGCTTGAATTCAGAATTTACATTTGCTCATGCAAGCAGACAAAAATGATCTTTGGGTGTTCTAGGCCATGCACATGTATACTGAAACAATATATGTATGCATTGCGAGGAAGTAGTAGGATATGATGCCCAATGACTACCCAGTCAATGCATGCACAATAGGTCTAATGACCGCCTGAATCTCCTGCCATTAACTTGTGCTTGGGTTAGCCTTGTCAACGATTAATAAGGAGTGCTGATTGACAGTTTGATCTTCAATGGGGATCTAAGGCGTCCATGATCTTAAAAATTGTTCATATTTGGTTAAAGTTGCAGGTCAAGTGAGTGTAGGATCAATGAATCGTGCTTTTGGGCAGCTAATGTTGAATATTTTGAATTAGGTTTTTTGAGAAAACGGGTTAGTAGTAGAGATAAATAGGGAAAACCAAAATTAGGGTCTTTGCAATGACTTTCACCTAATTGAGTTATATTTGATTCAGGAGCTTTGTAGTTGGAATAATTTTCCTGCAGTCTTTATTATTCTACTCAAGAAATCTTCACAAACAATGGTAATGCGAAAGCATTGATCTACCTCTTGGGAGGAACACGCAATCGCTGCGTTCATCTTTATCATTCTCTGGAACCGTTGTATTAGAACAGTGCTCTAGCTTATGGAAGCAGTTTGGTTTCTAAGCACAACTGTTTCTTTCTGTGAGAGGATAACTGCAACATCAGTTTTTCAGTCGGTTGTAGATACTAATTCAGCAGGTATAGTGGAATTATGAACGTTTTGTATTATGTTGTAGATACTAATTCAGCAGGTATAGTGGAATTATGAACGTTTTGTACTATGTTGCAGAAATAATCAAAGCAATGTAAAGGTGTTCTGGACTTAATATTCTCTTGTGGGATTTTATCTTTTGACTCGTTATACAAGTCAGACC

Fln Alignment:

sp_v1.1_unigene1973___KITTLVSVYLSDNKIQAVTDSIAGLVNLETLDLSGNVLVSLPDSLGLLKRLKFLNVSGNKLKCLPDSISMCSELIELDASYNQLIYLPTNFGYXXXXXXXXXXXXXXXRSLPSSFCELKSLRYLDVHFNELRSLPDALGDLKNLEVLNASSNFSDLVSLPESIGELTNLVELDVSNNQIKELPYSFGSXXXXXXXXXXXXXXMTPPNEIVVQGVEAVKEYMAKRWLDYLLEEEQKSMSATS--NNQTNNGWVQWGGSVLGGLISGTKESIRGYLGAPNKRQLDPYLEQQY
B8LQU6______________KITTLVLVNLSRNKIQAVTDSIAGLVNLETLDLSGNVLVSLPDSIGLLKRLKFLNISGNKLKSLPDSISMCSELIELDASYNQLTYLPTNFGYQLANLQKLLVQLNKLRSLPSSVCELKSLRYLDVHFNELRSLPEALGDLKNLEVLNASSNFSDLVSLPDSIGELTNLVELDVSNNQIKELPYSFGSLQNLKKLNLDQNPLMTPPNEIVVQGVEAVKEHMAKRWLDYLLEEEQKYMSANSNTNNQTNNGWVQWGSSVFGGLISGTKESIRGYLGASKKPHMESYLEQQY

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
379	16		83		0.994512
567		20		80	0.995493
570	60		40		1.0
626	83		16		0.994512
678	11		88		0.923564
680			11	88	0.923564
783	19		80		1.0
1141	87		12		0.992554
1150	11	88			0.923564
1154	88		11		0.923564
1155	88		11		0.923564
1469	90		10		0.90298
1554		10		90	0.999898
1555	10		90		0.999898
1869	11		88		0.923564
1934		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain