SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1965

Length: 805 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene1965 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cyclin B, putative n=1 Tax=Ricinus communis RepID=B9R8N2_RICCO	-	-	4.0e-19	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	cyclin	-	-	6.7071e-19	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cyclin, C-terminal	IPR004367	-	6.7071e-19	69%
Blast2go	Cyclin-like	IPR013763	-	6.7071e-19	69%

Full-Lengther Next Prediction

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
485		8	91		0.999766
486	4	8		87	0.999414
490		8	4	86	0.999539
491	13		86		1.0
493			8	91	0.999807
495	4	8		86	0.999539
496		4	8	86	0.999539
504	9			90	0.999872
505		90	9		0.999872
506			9	90	0.999872
512			10	90	0.999898
513	90	10			0.999898
515	10			90	0.999898
518	90			10	0.999898
519	90	10			0.999898
522	10			90	0.999898
525	11	88			0.999937
528	11		88		0.999937
529		11		88	0.999937
530	11			88	0.999937
535		88	11		0.999952
538	11			88	0.999952
541		88	11		0.999952
544	88		11		0.999952
620	85		14		0.999981
624			14	85	0.999981
628		85	14		0.999981
629			14	85	0.999981
631		14	85		0.999981
634	85		14		0.999981
726	90		10		0.90298
728	90	10			0.90298
729		90	10		0.90298
738		88	11		0.923564
740		11	88		0.923564
741	11	88			0.923564
742		12		87	0.992554
743	87		12		0.992554
746	87		12		0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain