SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1937

Length: 2917 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1937
CATTTCATGACACTATTCTATCTCTAGATGGTGAGGGGGGTTCGAGTAAACATTACAAGAGGGAACCTGTATTACAATATTGTGCAACAAGTGAAGATGAATCGTATAGTGGAAGAACAAGAACAGAACGTAAAAATGATGCAATGACAGTTCAACGAGTGTTTGCCTCTACTAGCGGGGAAACTGCATTCAGTGATTCCAAATCAGTTGAATCATATGTGGGCGAGATTCTAGCAAAGTCTCCACCAAAAGAACTTGGTGAACCTGTTCCTAATATTCCACTTTTGAAGGCCAATCCTCGGAAAATGCCAGCGAGAGTAGCTGCACTCCTAAGAATATTGGTTCCGACATTATATAACAAACAAGGTGCACAATTCTTTGCAGTATCTTTGCTTGTGATATCACGAACTTGGATTTCTGATCGTATAGCTTCCCTCAATGGCACAAGTGTAAAGTATGTTCTGGAGCAGGACAAGGCATCTTTTGTTCGACTAGTTGGAATTAGTATATTACAAAGTGCAGCCTCCTCTGTTGTTGCACCCTCCCTCAGGTATTTAACAGCAAAGCTGGCTCTAGGATGGCGGAAATGCTTAACAAACCATATTTCAAAGAATTATTTTAGAGAAAATGCATTTTACAAGTTGTTCAATCTGTCAGAGAAAGGTATAGATGCAGATCAGCGGATCACCCAAGACGTGGAAAAATTAAGTGACTGATTTGTCTGGGCTTGTTACGGGAATGGTGAAGCCATTGGTCGACATTCTATGGTTCACTTGGCGTATGAAGATGCTAACAGGGAGAAGGGGAGTTGTGATACTGTATGCGTACATGTTATTAGGTTTTGGCTTTCTGCGATCTGTAACTCCTGATTTCGAAACTCTGACAAGCAATGAACAACAACTTGAAAGCACATTCAGATTCATGCATTCAAGGCTTCGGACTCATGCAGAATCTGTTGCTTTCTTTGGTGGTGGTTCTCGAGAAAAAGCGATGGTGGAATCAAAGTTTAAAGATTTACTTCAGCACTCTGAAGCCCTTCTGAAGAAGAAGTGGTTTTTTGGAATAGCTGATGAGTTTATTACAAAGCAGCTACCTCACAATGTGACTTGGGGTTTAAGTTTGATGTATGCCATGGAGCACAAGGGAGATCGGGGTCAGACTTCCGTGCAAGGGGAATTAGCTCATGCATTGCGGTTCCTAGCTTCCGTGGTATCACAAAGCTTTCTAGCATTTGGTGATGTTCTTGAACTTCATGGGAAATTTCTGGGACTTTCAGGGGGTATCAGTAGAATAATGGAACTGGATGAGTTGTTGGATGCCACTCAACAAGATTTAGATCCCGCTTCACTTAATCCTTTAATGCTCATAGAAGAGAGGAGGAACTCATGGAAGTCTGATCATTCTCAGGATGGGAATATAATTTCCTTTTCAGAAGTTGATATCGTCACTCCTGCACAAAATCTGTTGGCAAGAAAGCTGACTTTCACAGTCACTCCACAAAAAAGCTTGTTAGTGACTGGCCCAAATGGAAATGGTAAGAGTTCTGTATTTCGAGTTCTGCGGGGCCTATGGCCAATAGCAAGTGGAAGAATTACTAAACCAAACCGGATGGACAAGCAGGAGGTATTTTATGTGCCTCAGCAGCCATATACTGCTCTTGGAACTCTTCGGGATCAGATTATATATCCACTAACTCTTCATGAAGCCATGTTGAAGGCATCCCAAGAATCTAGACAAGATGGTGACTGTGATGCTGCAGAGATACTGGATGCACGGTTAAAAAATATTTTAGAGAATATTAGACTTGTCTATCTTCTTGAACGAGAAGGGGGTTGGGATACCTCTACTAATTGGGAAGATATGCTATCTCTGGGTGAACAGCAGAGGCTTGGCATGGCTCGCTTATTTTTTCATAATCCCAAGTTTGGAATTCTTGATGAGTGCACCAATGCTACAAGTATTGATGTTGAAGAACAGCTGTACAAGTTTGCAGCGACTCTTGGCATTACAGTTGTGACTATTTCACAAAGGCCTGCTCTTATACCTTTCCATTCAACTGAGTTGCGACTGATTGATGGAGAAGGTAGTTGGGAACTTCGTTCTATCAAATCTTAAAGAGGAATGCGCAATATTGTGAAATTTCAGACTTTACATGGACATCACGATGTGCTTTGATGAGACAGTGCTGCATTTATGGGGGCAGCTTTATTATTTTTATAGCCTATACTTATGAACTGGAAGTTCTGATCGCTATTCAGTTTCTGGAGACCGTAATACTGAGACATATGCTGTATAATTGATTTTTAGATCATTTCAGGAAGCAGGTGGTCATGTACGGTCTTGCAGTTGATTTTCACTGTATTGGCAAATAGATGAAAATCCATGCTGGTGTTTATTATGCCAACAGTCGAAGGTGGTGCTATTCCCCCACATTAACATTGTATTAAATATCAACATCAGTTTGTAAAAATTAGACTTTGGGCCTGCAAAGGAGTCCATCGATTGGGGTTAGTCTTGTTACTAAGCAATTTGTTGGCAGCTGATCATGTGCCTTGTTTACCAATAATACAAAAATTTCATAAGTAGCAATAATGGTTGGCAACACTGCTGAATTCATAAGCTGCTTTGCAGTTTCAAGCAGTTTTGTAACCTATCTGTATCATATCATTGCCAACAGACAGGATTCAAGATGCAGAATTTATTTATTAAGTTTTAACAGATTGTATTTGCTGTACTATGTACATGATTTCCATTCTCCAGGAAATCAGCTACAAATTGATTTGAAGATCACTTGAGCACAAGAAATCAACTACAAATTGATTTGATCACTTGTCCACACCCTTGGAGGCGTATGTCATCTTATAACATTAAGAAGCAATTATTATCTAATTGATGCAGAATTTATTTATTAACTTTT

Ace file of the UniGene sp_v1.1_unigene1937

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter n=1 Tax=Selaginella moellendorffii RepID=D8R2U3_SELML	-	-	67%
FL-Next	sp=ABC transporter D family member 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	55%
Blast2go	abc transporter	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	fatty-acyl-CoA transport	GO:0015916	Biological Process	79%
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	79%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	79%
Blast2go	peroxisome	GO:0005777	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ABC transporter, N-terminal	IPR010509	-	0.0	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q94FB9

Fln msg: Separated hits, possible frame ERROR between 710 and 715, your sequence is shorter than subject: 705 - 1337

Fln protein: FHDTILSLDGEGGSSKHYKREPVLQYCATSEDESYSGRTRTERKNDAMTVQRVFASTSGETAFSDSKSVESYVGEILAKSPPKELGEPVPNIPLLKANPRKMPARVAALLRILVPTLYNKQGAQFFAVSLLVISRTWISDRIASLNGTSVKYVLEQDKASFVRLVGISILQSAASSVVAPSLRYLTAKLALGWRKCLTNHISKNYFRENAFYKLFNLSEKGIDADQRITQDVEKLxxxDLSGLVTGMVKPLVDILWFTWRMKMLTGRRGVVILYAYMLLGFGFLRSVTPDFETLTSNEQQLESTFRFMHSRLRTHAESVAFFGGGSREKAMVESKFKDLLQHSEALLKKKWFFGIADEFITKQLPHNVTWGLSLMYAMEHKGDRGQTSVQGELAHALRFLASVVSQSFLAFGDVLELHGKFLGLSGGISRIMELDELLDATQQDLDPASLNPLMLIEERRNSWKSDHSQDGNIISFSEVDIVTPAQNLLARKLTFTVTPQKSLLVTGPNGNGKSSVFRVLRGLWPIASGRITKPNRMDKQEVFYVPQQPYTALGTLRDQIIYPLTLHEAMLKASQESRQDGDCDAAEILDARLKNILENIRLVYLLEREGGWDTSTNWEDMLSLGEQQRLGMARLFFHNPKFGILDECTNATSIDVEEQLYKFAATLGITVVTISQRPALIPFHSTELRLIDGEGSWELRSIKS*

Protein Length: 706

Fln nts: CATTTCATGACACTATTCTATCTCTAGATGGTGAGGGGGGTTCGAGTAAACATTACAAGAGGGAACCTGTATTACAATATTGTGCAACAAGTGAAGATGAATCGTATAGTGGAAGAACAAGAACAGAACGTAAAAATGATGCAATGACAGTTCAACGAGTGTTTGCCTCTACTAGCGGGGAAACTGCATTCAGTGATTCCAAATCAGTTGAATCATATGTGGGCGAGATTCTAGCAAAGTCTCCACCAAAAGAACTTGGTGAACCTGTTCCTAATATTCCACTTTTGAAGGCCAATCCTCGGAAAATGCCAGCGAGAGTAGCTGCACTCCTAAGAATATTGGTTCCGACATTATATAACAAACAAGGTGCACAATTCTTTGCAGTATCTTTGCTTGTGATATCACGAACTTGGATTTCTGATCGTATAGCTTCCCTCAATGGCACAAGTGTAAAGTATGTTCTGGAGCAGGACAAGGCATCTTTTGTTCGACTAGTTGGAATTAGTATATTACAAAGTGCAGCCTCCTCTGTTGTTGCACCCTCCCTCAGGTATTTAACAGCAAAGCTGGCTCTAGGATGGCGGAAATGCTTAACAAACCATATTTCAAAGAATTATTTTAGAGAAAATGCATTTTACAAGTTGTTCAATCTGTCAGAGAAAGGTATAGATGCAGATCAGCGGATCACCCAAGACGTGGAAAAATTAAGxxxxxxTGATTTGTCTGGGCTTGTTACGGGAATGGTGAAGCCATTGGTCGACATTCTATGGTTCACTTGGCGTATGAAGATGCTAACAGGGAGAAGGGGAGTTGTGATACTGTATGCGTACATGTTATTAGGTTTTGGCTTTCTGCGATCTGTAACTCCTGATTTCGAAACTCTGACAAGCAATGAACAACAACTTGAAAGCACATTCAGATTCATGCATTCAAGGCTTCGGACTCATGCAGAATCTGTTGCTTTCTTTGGTGGTGGTTCTCGAGAAAAAGCGATGGTGGAATCAAAGTTTAAAGATTTACTTCAGCACTCTGAAGCCCTTCTGAAGAAGAAGTGGTTTTTTGGAATAGCTGATGAGTTTATTACAAAGCAGCTACCTCACAATGTGACTTGGGGTTTAAGTTTGATGTATGCCATGGAGCACAAGGGAGATCGGGGTCAGACTTCCGTGCAAGGGGAATTAGCTCATGCATTGCGGTTCCTAGCTTCCGTGGTATCACAAAGCTTTCTAGCATTTGGTGATGTTCTTGAACTTCATGGGAAATTTCTGGGACTTTCAGGGGGTATCAGTAGAATAATGGAACTGGATGAGTTGTTGGATGCCACTCAACAAGATTTAGATCCCGCTTCACTTAATCCTTTAATGCTCATAGAAGAGAGGAGGAACTCATGGAAGTCTGATCATTCTCAGGATGGGAATATAATTTCCTTTTCAGAAGTTGATATCGTCACTCCTGCACAAAATCTGTTGGCAAGAAAGCTGACTTTCACAGTCACTCCACAAAAAAGCTTGTTAGTGACTGGCCCAAATGGAAATGGTAAGAGTTCTGTATTTCGAGTTCTGCGGGGCCTATGGCCAATAGCAAGTGGAAGAATTACTAAACCAAACCGGATGGACAAGCAGGAGGTATTTTATGTGCCTCAGCAGCCATATACTGCTCTTGGAACTCTTCGGGATCAGATTATATATCCACTAACTCTTCATGAAGCCATGTTGAAGGCATCCCAAGAATCTAGACAAGATGGTGACTGTGATGCTGCAGAGATACTGGATGCACGGTTAAAAAATATTTTAGAGAATATTAGACTTGTCTATCTTCTTGAACGAGAAGGGGGTTGGGATACCTCTACTAATTGGGAAGATATGCTATCTCTGGGTGAACAGCAGAGGCTTGGCATGGCTCGCTTATTTTTTCATAATCCCAAGTTTGGAATTCTTGATGAGTGCACCAATGCTACAAGTATTGATGTTGAAGAACAGCTGTACAAGTTTGCAGCGACTCTTGGCATTACAGTTGTGACTATTTCACAAAGGCCTGCTCTTATACCTTTCCATTCAACTGAGTTGCGACTGATTGATGGAGAAGGTAGTTGGGAACTTCGTTCTATCAAATCTTAAAGAGGAATGCGCAATATTGTGAAATTTCAGACTTTACATGGACATCACGATGTGCTTTGATGAGACAGTGCTGCATTTATGGGGGCAGCTTTATTATTTTTATAGCCTATACTTATGAACTGGAAGTTCTGATCGCTATTCAGTTTCTGGAGACCGTAATACTGAGACATATGCTGTATAATTGATTTTTAGATCATTTCAGGAAGCAGGTGGTCATGTACGGTCTTGCAGTTGATTTTCACTGTATTGGCAAATAGATGAAAATCCATGCTGGTGTTTATTATGCCAACAGTCGAAGGTGGTGCTATTCCCCCACATTAACATTGTATTAAATATCAACATCAGTTTGTAAAAATTAGACTTTGGGCCTGCAAAGGAGTCCATCGATTGGGGTTAGTCTTGTTACTAAGCAATTTGTTGGCAGCTGATCATGTGCCTTGTTTACCAATAATACAAAAATTTCATAAGTAGCAATAATGGTTGGCAACACTGCTGAATTCATAAGCTGCTTTGCAGTTTCAAGCAGTTTTGTAACCTATCTGTATCATATCATTGCCAACAGACAGGATTCAAGATGCAGAATTTATTTATTAAGTTTTAACAGATTGTATTTGCTGTACTATGTACATGATTTCCATTCTCCAGGAAATCAGCTACAAATTGATTTGAAGATCACTTGAGCACAAGAAATCAACTACAAATTGATTTGATCACTTGTCCACACCCTTGGAGGCGTATGTCATCTTATAACATTAAGAAGCAATTATTATCTAATTGATGCAGAATTTATTTATTAACTTTT

Fln Alignment:

sp_v1.1_unigene1937___FHDTILSLDGEGGSSKHYKREPVLQYCATSEDESYSGRTRTERKNDAMTVQRVFASTSGETAFSDSKSVESYVGEILAKSPPKELGEPVPNIPLLKANPRKMPARVAALLRILVPTLYNKQGAQFFAVSLLVISRTWISDRIASLNGTSVKYVLEQDKASFVRLVGISILQSAASSVVAPSLRYLTAKLALGWRKCLTNHISKNYFRENAFYKLFNLSEKGIDADQRITQDVEKLSxxDLSGLVTGMVKPLVDILWFTWRMKMLTGRRGVVILYAYMLLGFGFLRSVTPDFETLTSNEQQLESTFRFMHSRLRTHAESVAFFGGGSREKAMVESKFKDLLQHSEALLKKKWFFGIADEFITKQLPHNVTWGLSLMYAMEHKGDRGQTSVQGELAHALRFLASVVSQSFLAFGDVLELHGKFLGLSGGISRIMELDELLDATQQDLDPASLNPLMLIEERRNSWKSDHSQDGNIISFSEVDIVTPAQNLLARKLTFTVTPQKSLLVTGPNGNGKSSVFRVLRGLWPIASGRITKPNRMDKQE------VFYVPQQPYTALGTLRDQIIYPLTLHEAMLKASQ-ESRQDGDCDAAEILDARLKNILENIRLVYLLERE-GGWDTSTNWEDMLSLGEQQRLGMARLFFHNPKFGILDECTNATSIDVEEQLYKFAATLGITVVTISQRPALIPFHSTELRLIDGEGSWELRSIK
Q94FB9______________FHDVVLSLDGEGGWSVHYKRDDSALLTDAEIDSVKS--SDTDRQNDAMVVQRAFAAARKESA-TNSKA-QSYQTQLIARSPVVDKSVVLPRFPQPQTSQRALPSRVAAMLNVLIPTIFDKQGAQLLAVACLVVSRTLISDRIASLNGTTVKYVLEQDKAAFVRLIGLSVLQSGASSIIAPSLRHLTQRLALGWRIRLTQHLLRNYLRNNAFYKVFHMSGNSIDADQRLTRDLEKLTxxDLSGLLTGMVKPSVDILWFTWRMKLLTGQRGVAILYTYMLLGLGFLRRVAPDFGDLAGEEQQLEGKFRFMHERLNTHAESIAFFGGGAREKAMVDKKFRALLDHSLMLLRKKWLYGILDDFVTKQLPNNVTWGLSLLYALEHKGDRALVSTQGELAHALRYLASVVSQSFMAFGDILELHKKFLELSGGINRIFELDEFLDASQSGV------------TSENQTSRLDSQD--LLSFSEVDIITPAQKLMASKLSCEIVSGKSLLVTGPNGSGKTSVFRVLRDIWPTVCGRLTKPS-LDIKELGSGNGMFFVPQRPYTCLGTLRDQIIYPLSKEEAEKRAAKLYTSGESSTEAGSILDSHLKTILENVRLVYLLERDVGGWDATTNWEDILSLGEQQRLGMARLFFHRPKFGVLDECTNATSVDVEEQLYRVARDMGVTFITSSQRPALIPFHSLELRLIDGEGNWELRSIE

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
1101	60	40			1.0
1171	80		20		0.995493
1176		60		40	1.0
1453			66	33	0.997452
1890	33	66			0.997452
1892		66	33		0.997452
1893			33	66	0.997452
1951	83	16			0.994512
1995	87		12		0.992554
1996	87	12			0.992554
1998	87			12	0.992554
2002		12	87		0.992554
2004	87			12	0.992554
2220		11	88		0.923564
2221	11		88		0.923564
2222		11	88		0.923564
2223			88	11	0.923564
2263	87		12		0.992554
2321		14		85	0.993533
2326	11			88	0.923564
2327		12		87	0.992554
2329	87	12			0.992554
2330	12		87		0.992554
2790	69		30		1.0
2850		83	16		0.994512
2929		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain