SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1929

Length: 1146 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1929

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleosome remodeling factor, p48 subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJC1_PHYPA	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	nucleosome chromatin assembly factor group	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	trichome differentiation	GO:0010026	Biological Process	81%
Blast2go	positive regulation of cell cycle	GO:0045787	Biological Process	81%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	81%
Blast2go	regulation of flower development	GO:0009909	Biological Process	81%
Blast2go	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	81%
Blast2go	seed coat development	GO:0010214	Biological Process	81%
Blast2go	pollen development	GO:0009555	Biological Process	81%
Blast2go	heterochromatin assembly	GO:0031507	Biological Process	81%
Blast2go	cell proliferation	GO:0008283	Biological Process	81%
Blast2go	protein binding	GO:0005515	Molecular Function	81%
Blast2go	chromatin remodeling complex	GO:0016585	Cellular Component	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS29

Fln msg: your sequence is shorter than subject: 327 - 421

Fln protein: GDGDVKRPQDKMKPGTSGGTMGKVRILQQINHQKEVNRARYMPQKPTIIATKTVNADVYVFDYSKHPSKPPQEGRCNPELRLQGHESEGYGLSWSPLKEGHLLSASDDAQICLWDITAATKAPKVVEANQIFRYHDGPVEDVAWHAIHDHLFGSVGDDHHLLLWDIRNDSEKPLHIVEAHQAEVNCLAFNPFNEWIVATGSADRTVALHDIRKLDKVLHTCAHHIEEVFQIGWSPQNGAILASCGSDRRLMVWDLSRIGDEQNPEDAEEAPPELLFIHGGHTSKISDFSWNPAEEWVIASVAEDNILQVWQMSEHIYNDDNASPTA*

Protein Length: 328

Fln nts: ATGGCGATGGCGATGTCAAACGGCCCCAGGATAAAATGAAACCGGGAACCTCTGGGGGGACAATGGGGAAGGTTCGAATACTTCAGCAGATAAACCATCAGAAGGAAGTGAACCGGGCGAGATACATGCCTCAGAAACCCACAATCATTGCAACAAAGACTGTGAATGCGGATGTTTATGTCTTCGATTACAGTAAACACCCGTCCAAGCCTCCCCAGGAGGGGCGTTGCAATCCGGAACTGCGGCTTCAAGGTCACGAGTCTGAAGGCTATGGCTTGTCTTGGAGCCCTCTCAAGGAAGGTCATCTGTTGAGTGCTTCAGATGATGCCCAAATTTGCCTCTGGGACATCACTGCTGCCACCAAAGCCCCCAAGGTGGTGGAAGCCAACCAAATATTTCGGTACCACGATGGACCAGTGGAGGACGTAGCATGGCACGCAATTCATGATCATCTTTTTGGGTCTGTAGGGGATGACCATCATTTGCTTCTATGGGATATCAGGAACGACTCTGAGAAGCCACTTCATATTGTTGAAGCTCACCAAGCTGAGGTTAACTGTTTGGCTTTCAATCCTTTCAATGAATGGATTGTGGCTACAGGCTCTGCAGACAGAACTGTTGCACTCCATGACATTCGTAAGCTGGACAAAGTTCTTCATACTTGTGCACACCACATAGAAGAAGTGTTCCAAATTGGTTGGAGTCCCCAAAACGGAGCTATATTAGCATCGTGTGGATCGGATAGACGACTCATGGTTTGGGACCTCAGTAGAATTGGCGATGAGCAAAATCCAGAGGATGCTGAGGAGGCACCTCCTGAACTGCTATTCATACATGGAGGACATACCAGCAAGATTTCAGACTTTTCATGGAATCCAGCTGAGGAATGGGTAATTGCCAGTGTTGCTGAAGACAACATTCTTCAAGTTTGGCAGATGTCAGAGCACATTTACAATGATGACAATGCTTCACCAACAGCTTAA___TAGGTTTGTTGCTGTTTGGACCAGCTAATTGATTGTTTACAGGACTTCGGAAAAATGTGGAGCCTCTGTGCCATATTCCATGGCACAGGGCTGAAGAAGCCTGAATATCAGCAGAAAGCGAGCTTGTATATTGCAGCAACGTTAATGATTCTCTTTTATGAGA

Fln Alignment:

sp_v1.1_unigene1929___GTSGGTMGKVRILQQINHQKEVNRARYMPQKPTIIATKTVNADVYVFDYSKHPSKPPQEGRCNPELRLQGHESEGYGLSWSPLKEGHLLSASDDAQICLWDITAATKAPKVVEANQIFRYHDGPVEDVAWHAIHDHLFGSVGDDHHLLLWDIRNDS-EKPLHIVEAHQAEVNCLAFNPFNEWIVATGSADRTVALHDIRKLDKVLHTCAHHIEEVFQIGWSPQNGAILASCGSDRRLMVWDLSRIGXXXXXXXXXXXXXXLLFIHGGHTSKISDFSWNPAEEWVIASVAEDNILQVWQMSEHIYNDDNASP
B8LS29______________GGFGCANGKVQVIQQINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPQDGGCNPDLRLRGHNTEGYGLSWSPFKHGHLLSGSDDAQICLWDINAPAKN-KVLEAQQIFKVHEGVVEDVAWHLRHEYLFGSVGDDRHLLIWDLRTSAANKPLHSVVAHQGEVNCLAFNPFNEWVLATGSADRTVKLFDLRKITSALHTFSCHKEEVFQIGWSPKNETILASCSADRRLMVWDLSRIDDEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEEDMP

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
376		50		50	1.0
506		80		20	0.995493
733	25		75		0.996473
734			25	75	0.996473
738			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain