SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1924

Length: 961 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1924

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PSL3; signal peptide peptidase-like protein	-	-	9.0e-30	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	signal peptide peptidase	-	-	0.0	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase A22, presenilin signal peptide	IPR006639	-	0.0	60%
Blast2go	Peptidase A22B, signal peptide peptidase	IPR007369	-	0.0	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUM9

Fln msg: your sequence is shorter than subject: 251 - 450

Fln protein: SESFQIEVPKWLLQDNENPVQLTSTYAYILALSIGIATVIANKQAGASFTFNNFIATCIATEGLRLFSLGSFVTAASLLSGLLLYDVFWVFGSSHFFGDNVMLTVATSSAFDGPTKLIFPHLEGNSALPYSLLGLGDVAVPGLLTALMLRFDRSCRSTRTDGATEYSSTGLLTRPDKTYFSTCIASYIFGLALTAVANGVSKAAQPALLYLVPSQLISIFLVSLKRSEIDLLINYKEEIMDNTSDVEPEN*

Protein Length: 252

Fln nts: TTCAGAGTCATTCCAAATAGAGGTTCCAAAATGGCTTCTTCAAGACAATGAAAATCCCGTGCAACTCACATCAACCTATGCATATATTCTTGCTTTATCTATAGGTATTGCAACAGTGATTGCAAATAAACAGGCTGGAGCCTCTTTCACCTTCAACAACTTTATTGCTACTTGTATTGCAACTGAGGGCCTACGTCTTTTTTCCTTAGGCAGTTTTGTGACAGCTGCCTCGTTGCTCTCTGGATTGCTTTTATATGATGTTTTCTGGGTATTTGGGTCTTCGCATTTCTTTGGCGACAATGTCATGCTTACTGTTGCAACTTCTTCTGCATTTGATGGCCCCACAAAACTGATTTTTCCACACCTTGAGGGAAACTCCGCCTTGCCTTATTCCCTTTTGGGACTAGGGGATGTAGCTGTACCAGGTCTGCTGACTGCTTTGATGCTGCGATTTGATCGGTCATGCCGTTCAACAAGAACAGATGGAGCTACAGAGTATTCCAGCACAGGTCTATTGACTAGGCCAGACAAGACATACTTCTCAACTTGCATTGCTTCCTATATTTTTGGCTTAGCTCTAACAGCTGTGGCAAATGGAGTCTCCAAAGCAGCACAACCTGCACTTTTGTACCTTGTCCCCTCTCAACTTATTAGCATTTTCCTTGTGTCACTTAAAAGGTCCGAGATTGATCTCCTGATTAACTATAAAGAGGAGATTATGGATAACACAAGTGATGTGGAGCCGGAAAATTAA___GCATTATTTTACTTTATTTTTTCATTCATTCAAATGTAAACTATTTTGTGTTATTTGGCCTGAAAATGAGCTGCTTTGAATATTCTTATGGAAGAGTGAACAAGTACCTCATTTATACAAATCCGAGGAAATGATTGTGATGAGGTATGCACAGATCATAATTATATAACCATTATGGCATTCTAGATTCTTGTCTTTTATGGTATT

Fln Alignment:

sp_v1.1_unigene1924___FQIEVPKWLLQDNENPVQLTSTYAYILALSIGIATVIANKQAGASFTFNNFIATCIATEGLRLFSLGSFVTAASLLSGLLLYDVFWVFGSSHFFGDNVMLTVATSSAFDGPTKLIFPHLEGNSALPYSLLGLGDVAVPGLLTALMLRFDRSCRSTRTDGATEYSSTGLLTRPDKTYFSTCIASYIFGLALTAVANGVSKAAQPALLYLVPSQLISIFLVSLKRSEIDLLINYKEEIMDNTSDVEPEN
A9NUM9______________FQTEVPKWILQDNESPVKLTSTYADLLAFSIGIAIVIANKQAGASFTFNNIIATCIATELLRLFSLGSFVTAASLLSGLLLYDVFWVFGSSHVFGDNVMLTVATSSAFDGPIKLIFPHLEGNSTFPYSLLGLGDVAVPGLLTALMLRFDRSRDSTRIDGAIECSSTGPLTKPDKTYFSTCIASYIFGLALTVVANGVSKAAQPALLYLVPSQLISIFLVSLKRSEIDLLFDYKEEI----AGVEPEN

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
198	50		50		1.0
444	16			83	0.994512
446			16	83	0.994512
448	83		16		0.994512
527			85	14	0.993533
530		85	14		0.993533
531	85		14		0.993533
588	83		16		0.994512
596		83		16	0.994512
631		25		75	1.0
632			25	75	1.0
642			25	75	1.0
645		75	25		1.0
646		75		25	1.0
648	25			75	1.0
674	44		55		1.0
829			60	40	1.0
856	50			50	1.0
921	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain