SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1918

Length: 1541 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1918

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome regulatory subunit, putative; K06693 26S proteasome non-ATPase regulatory subunit 9	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	52%
Blast2go	26s proteasome non-atpase regulatory	-	-	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	PDZ domain	IPR001478	-	0.0	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D8QU42

Fln msg:

Fln protein: MVGTNVKAETMAMIEKRSGIEAEMNAIIDRLCEPNGPGISGNLLDAEGFPRSDIDVAAVRSSRHRLAILRNDHKDITEKIDQNLQILLSGGRLGDSPMPPQRRRDGGGLQYQISSGLNSISSSLPDAATSENQSTPMDEDAIVRLPFSLVDEIFDGSPAASDGLQLGDQILKFGSVDGGENLVSRLARECQTNQGSAIPVIVMRRGVQVHLNVTPRPWSGRGLLGCHFQWL*

Protein Length: 233

Fln nts: ATGGGGATTGGACCCTGCCTTTTATCCTACCACCTTTAATATTTGATATTATACCCGTCTGAGCCGTTTCACCTTTCAGTGGTTCAACCTTTTCGTGGTCGGGACGCATTTACCATAATTGGGAATTTAAATCGGAGTGTTGGACCGCAGGGGTTCCAAGAAAGAAAGAACATAGGGGAATGATAGGATCAACAAAGCGGTTAGAGCAGGACAAACATCACAAACGCAGCTGAACTCCATCTTTATTTAGACTGTGGTGCACACAAGCGTTAGGAATTGGAATAAAGGATAGGATTGGCAAGTAAAG_-_ATGGTGGGAACAAATGTGAAGGCGGAGACCATGGCTATGATCGAAAAGAGAAGTGGCATTGAGGCAGAAATGAATGCAATAATCGATAGACTGTGTGAACCCAATGGTCCTGGCATTTCTGGCAACCTCCTTGACGCTGAAGGTTTTCCACGGTCTGATATTGACGTTGCAGCTGTTCGCTCCAGTCGGCATCGTCTTGCTATATTGCGTAATGACCATAAGGACATAACAGAAAAAATAGATCAGAATCTTCAGATATTGCTGTCAGGAGGTCGTCTTGGAGATTCACCAATGCCACCCCAAAGAAGAAGAGATGGAGGAGGACTACAATATCAAATTTCATCTGGGTTGAACAGTATCAGTTCTTCTTTGCCAGATGCTGCCACTTCTGAAAATCAATCTACTCCAATGGATGAAGATGCAATTGTGAGGCTTCCATTCTCTCTGGTTGATGAAATATTTGATGGGTCTCCTGCTGCATCAGATGGACTTCAACTAGGAGATCAGATCCTGAAATTTGGTTCTGTGGATGGTGGTGAAAATTTAGTTTCGAGACTTGCAAGGGAGTGTCAAACCAACCAAGGCTCAGCAATCCCTGTGATAGTTATGAGGCGAGGTGTACAAGTGCATCTGAATGTGACACCACGACCCTGGTCAGGTCGAGGACTCTTGGGGTGCCATTTTCAATGGTTATGA___TTGTTGCCGCAGAAATGATATTTAATATTTTCTTTAGGGATTCCTTCGACCTTAGTCATAGCAGTTGGAATGTATTTTTAATCTTTTCATAACTATTTTAGTTATGAATGCAAGTAGCATGTGTGTGTTGTAAATGCTTTATACCTTTTTGAGGATGTCTACATTTTGAAAATGTTGATGTCATATATCCAGTGGCTCATATTTTAGGGCTTCACAGTTTGAATGTTGAACGCATGCTCTTCATTATTAAATGTAAAATTTCTTTGCTAACTTGGGGAGGATACAGAGATGGAAACAAGGATCTTAAGTGATTAAAGTTGCTTTTCATTATTAAATGTGAAATTTCCTTGCTATCTTGAGGAGGATACAGAGTTGGAAACAATATTATTGATTAAAGTTTGTATAGACTGGGGATACGGGAAACAAAGAATCCAAAAGAGATGTACATGGGTTTTTATGAATTTCGTGAAGGTGGACAATGCGTAACAAGAATGGTTGAACAGGTCCAAAGTTATTTTATATAAACTTTTAGTTGTGG

Fln Alignment:

sp_v1.1_unigene1918___MVGTNVKAETMAMIEKRSGIEAEMNAIIDRLCEPNGPGISGNLLDAEGFPRSDIDVAAVRSSRHRLAILRNDHKDITEKIDQNLQILLSGGRLGDSPMPPQRRRDGGGLQYQXXXXXXXXXXXXPDAATSENQSTPMDEDAIVRLPFSLVDEIFDGSPAASDGLQLGDQILKFGSVD-GGENLVSRLARECQTNQGSAIPVIVMRRGVQVHLNVTPRPWSGRGLLGCHFQ
D8QU42______________MVGANIKAETMALMEQRTAMEEEMDGIIQRLCRPGGPGLSGNLVDNEGFPRADIDVAAVRSDRQKLAVLKNDRKEITDRIEKNIHILHSGSKDLDFSLPQKRTAEGEQVPQRFFQSGSG------GASSIENAAVAMDEDNPGRLPFAVFDEVAEGSPAARDGIVVGDQLVKFGSVEGGGDDCLRRLALEGQSHENRAIAVIVLRRGVEEHLYVTPRRWGGSGLLGCHIQ

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
225	83		16		0.994512
226	83		16		0.994512
227		83	16		0.994512
351	33	66			1.0
402			83	11	0.999887
462	18		81		1.0
489		81		18	1.0
499	18	81			1.0
537	76	23			1.0
578	50		50		1.0
632	12		87		0.992554
668			11	88	0.923564
676		11		88	0.923564
709	87		12		0.992554
882	90		10		0.90298
883	90			10	0.90298
884	90	10			0.90298
885		90	10		0.90298
886		90		10	0.90298
887	90		10		0.90298
891	90			10	0.90298
892	90			10	0.90298
898	90		10		0.90298
899			90	10	0.90298
902	90	10			0.90298
906	10	90			0.90298
963	10		90		0.90298
1069	88		11		0.923564
1290		88	11		0.923564
1291	88			11	0.923564
1295	88		11		0.923564
1299	88			11	0.923564
1301	88		11		0.923564
1343	30		69		1.0
1416	12		87		0.992554
1439		66	33		1.0
1480			50	50	1.0
1512		50		50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
158	170	AAGA AAGA AAGA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain