SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1906

Length: 2439 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1906
CGTCGTGACCTTGGCTGTCACTCAAAATTGAGGTCAGGAAAACCCAAGGTTTGGAATCGGGATTCCCGGTACCCAGAGCAACAGTGACCACCGAGATTCATATACGTAAAGTGGAATCTGAAGGTAATGTGAGGCTTCAAAAGGCCAGAAAATGTCAGCAATGGCTTCAGCGGCGCTCGCAGCGTCTTCCACCGTCGGAATCCGGGCTCCCCACATCTCTACCGTCCAACGCAACCACCACAACCACAGATCGCCGCCACTGTCTTCGATCGCCCTAGCAGCAGCGCCCGCCAGGCCTTTCTTGCAATGCCGGGACTCGATCTCGCGACCTCATGCCGCCGCCGGCAGGAGCTCCCTGGTCTCGTCGTGGTGGGGAAGGCAGCAACAAATCCAGGAGCAGAAACGGCCATTATTCGCGCCGTTAGAAGGCTTACGGCGCCGCCGTAACTCGCCGCCGGGTGCAAGCCCACGCGCCTCTTCAGCGGCCGTGACACCTGCGCCGCCAGCGCAGCCAGCGCAGCCATGGCAAGGCGCGGCTCTGAAACCCCTGGCGGCGTCGATCGCCACGGGCGTCATCTTGTGGTTGGTGCCGGCGCCGGCGGGAGTTGCGAAGAACGCGTGGCAGCTGCTGGCTATATTCTTAGCCACGATTGTGGGGATCATAACGCAGCCGTTGCCTTTGGGGGCCGTGGCCCTGATGGGCCTCGGTGCCGCGGTGCTCACCAAAACCCTGACCTTCGCAGCGGCCTTCTCGGCCTTCGGGGACCAGATACCGTGGCTCATCGCACTCGCCTTCTTCTTCGCCCGTGGCTTCATCAAAACGGGGCTCGGCAACCGCATTGCCTACCAGTTCGTGGCTCTGTTCGGGAGCTCGTCGCTGGGGTTAGGGTACAGCCTGGTGTTCAGCGAGGCGCTCCTCGCCCCAGCGATCCCCTCTGTCTCCGCCCGAGCTGGAGGCATCTTTTTGCCGCTTGTGAAGTCTCTCTGCGTGGCCTGCGGAAGCAACGTCGGCGACGGGACGGAGCGACGGCTAGGATCGTGGCTCATGCTCACCTGCTTCCAGACGTCCGTGATTTCCTCTGCCATGTTCTTGACGGCCATGGCGGCTAATCCCCTAAGCGTGAATCTTGCCGCGGGGGCCATCGGGCAGACCATCGGGTGGACGGATTGGGCGGTCGCAGCGCTGGTGCCCGGTCTGGTGTCTCTGATCGTTGTCCCGCTTCTTCTTTATGTGATCTACCCTCCCTCTGTCAAGAGCAGCCCCGATGCGCCGAAGCTCGCCAAGGAGAAGCTGGAGAAAATGGGACCAATGACCAAGAACGAGACCATCATGAGCGCTACGTTGCTGGTCACGGTGGGCCTTTGGATATTTGGGGGAATGTTGAAGGTGGATGCCGTCACTGCAGCAATCCTTGGTTTGTCTGTCCTTCTCTGTACAGGTGTTGTGACATGGAAGGAGTGCCTGGCTGAATCGGTAGCTTGGGACACCCTTACGTGGTTTGCTGCACTAATTGCAATGGCAGGTTATCTCAACAAGTATGGTCTTATTTCATGGTTTAGCCAGACTGTTGTGAAGGTTGTAGGTGGACTCGGTCTGTCATGGCAGCTTTCTTTTGGAATATTGGTTTTGCTGTACTTTTATTCTCACTACTTCTTTGCAAGTGGTGCAGCTCATATTGGGGCAATGTTCACTGCCTTTTTATCTGTTGCAAGTGCTTTAGGAACCCCACCTCTCTTTGGGGCAATGGTTCTTGCCTTCCTTTCAAATATTATGGGAGGCCTTACACATTATGGTATTGGATCGGCACCTGTGTTCTATGGTGCTAACTATGTGCCTTTGGCTGAATGGTGGGGTTATGGCCTCCTCATCTCTGTTGTGAACATCGTTATTTGGCTTGGACTTGGAGGAGTGTGGTGGAAATTCTTGGGCTTATGGTAATTTGTTGAAACAACGAGCTTGTGCTGAAAAGCAAATAATCTAGAAGTACAAGTTTTAGGAAATCTTGAACATGTCAAAATATCTGAGTTTGGTCCGAATTTTCAGTTCTTGACTGAGAGTCAATCTTGTGTTTCTCCATCTCATATCAATAATGGGTCCGGGCCAGGGTAATTGTAATAATGTTGATTTTCTAACCAGCAATTCATTCTTTTGGGATATAATATAGTTTTTACTGTGGTCCTTGCTCCTGCTAAGGCTGTAGATCAACTACTATATATTTGTGCTAAACTTGCCAAGGACGATGGTAATATTTACACATGCAGATTATCAGAGTAGGAAATCACTTTTGAGAGTGCTTTTACAGAAGAACAATAGATTATAAAATGTGCAAATGATCAAGTTGCATTATTTTGTGCTTGACCTTGATAGAGTTGCGAATTGCAGTAATTGTGCAATGGACTTTTTATATTTTTTATTCTACAAGTACTGTTGTGCAAGCC

Ace file of the UniGene sp_v1.1_unigene1906

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	2-oxoglutarate/malate translocator, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9RID8_RICCO	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	2-oxoglutarate malate translocator	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	93%
Blast2go	response to nematode	GO:0009624	Biological Process	93%
Blast2go	mitochondrion	GO:0005739	Cellular Component	93%
Blast2go	chloroplast	GO:0009507	Cellular Component	93%
Blast2go	membrane	GO:0016020	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Sodium/sulphate symporter	IPR001898	-	0.0	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVU0

Fln msg:

Fln protein: MSAMASAALAASSTVGIRAPHISTVQRNHHNHRSPPLSSIALAAAPARPFLQCRDSISRPHAAAGRSSLVSSWWGRQQQIQEQKRPLFAPLEGLRRRRNSPPGASPRASSAAVTPAPPAQPAQPWQGAALKPLAASIATGVILWLVPAPAGVAKNAWQLLAIFLATIVGIITQPLPLGAVALMGLGAAVLTKTLTFAAAFSAFGDQIPWLIALAFFFARGFIKTGLGNRIAYQFVALFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNVGDGTERRLGSWLMLTCFQTSVISSAMFLTAMAANPLSVNLAAGAIGQTIGWTDWAVAALVPGLVSLIVVPLLLYVIYPPSVKSSPDAPKLAKEKLEKMGPMTKNETIMSATLLVTVGLWIFGGMLKVDAVTAAILGLSVLLCTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLISWFSQTVVKVVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPLFGAMVLAFLSNIMGGLTHYGIGSAPVFYGANYVPLAEWWGYGLLISVVNIVIWLGLGGVWWKFLGLW*

Protein Length: 597

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAATTGAGGTCAGGAAAACCCAAGGTTTGGAATCGGGATTCCCGGTACCCAGAGCAACAGTGACCACCGAGATTCATATACGTAAAGTGGAATCTGAAGGTAATGTGAGGCTTCAAAAGGCCAGAAA_-_ATGTCAGCAATGGCTTCAGCGGCGCTCGCAGCGTCTTCCACCGTCGGAATCCGGGCTCCCCACATCTCTACCGTCCAACGCAACCACCACAACCACAGATCGCCGCCACTGTCTTCGATCGCCCTAGCAGCAGCGCCCGCCAGGCCTTTCTTGCAATGCCGGGACTCGATCTCGCGACCTCATGCCGCCGCCGGCAGGAGCTCCCTGGTCTCGTCGTGGTGGGGAAGGCAGCAACAAATCCAGGAGCAGAAACGGCCATTATTCGCGCCGTTAGAAGGCTTACGGCGCCGCCGTAACTCGCCGCCGGGTGCAAGCCCACGCGCCTCTTCAGCGGCCGTGACACCTGCGCCGCCAGCGCAGCCAGCGCAGCCATGGCAAGGCGCGGCTCTGAAACCCCTGGCGGCGTCGATCGCCACGGGCGTCATCTTGTGGTTGGTGCCGGCGCCGGCGGGAGTTGCGAAGAACGCGTGGCAGCTGCTGGCTATATTCTTAGCCACGATTGTGGGGATCATAACGCAGCCGTTGCCTTTGGGGGCCGTGGCCCTGATGGGCCTCGGTGCCGCGGTGCTCACCAAAACCCTGACCTTCGCAGCGGCCTTCTCGGCCTTCGGGGACCAGATACCGTGGCTCATCGCACTCGCCTTCTTCTTCGCCCGTGGCTTCATCAAAACGGGGCTCGGCAACCGCATTGCCTACCAGTTCGTGGCTCTGTTCGGGAGCTCGTCGCTGGGGTTAGGGTACAGCCTGGTGTTCAGCGAGGCGCTCCTCGCCCCAGCGATCCCCTCTGTCTCCGCCCGAGCTGGAGGCATCTTTTTGCCGCTTGTGAAGTCTCTCTGCGTGGCCTGCGGAAGCAACGTCGGCGACGGGACGGAGCGACGGCTAGGATCGTGGCTCATGCTCACCTGCTTCCAGACGTCCGTGATTTCCTCTGCCATGTTCTTGACGGCCATGGCGGCTAATCCCCTAAGCGTGAATCTTGCCGCGGGGGCCATCGGGCAGACCATCGGGTGGACGGATTGGGCGGTCGCAGCGCTGGTGCCCGGTCTGGTGTCTCTGATCGTTGTCCCGCTTCTTCTTTATGTGATCTACCCTCCCTCTGTCAAGAGCAGCCCCGATGCGCCGAAGCTCGCCAAGGAGAAGCTGGAGAAAATGGGACCAATGACCAAGAACGAGACCATCATGAGCGCTACGTTGCTGGTCACGGTGGGCCTTTGGATATTTGGGGGAATGTTGAAGGTGGATGCCGTCACTGCAGCAATCCTTGGTTTGTCTGTCCTTCTCTGTACAGGTGTTGTGACATGGAAGGAGTGCCTGGCTGAATCGGTAGCTTGGGACACCCTTACGTGGTTTGCTGCACTAATTGCAATGGCAGGTTATCTCAACAAGTATGGTCTTATTTCATGGTTTAGCCAGACTGTTGTGAAGGTTGTAGGTGGACTCGGTCTGTCATGGCAGCTTTCTTTTGGAATATTGGTTTTGCTGTACTTTTATTCTCACTACTTCTTTGCAAGTGGTGCAGCTCATATTGGGGCAATGTTCACTGCCTTTTTATCTGTTGCAAGTGCTTTAGGAACCCCACCTCTCTTTGGGGCAATGGTTCTTGCCTTCCTTTCAAATATTATGGGAGGCCTTACACATTATGGTATTGGATCGGCACCTGTGTTCTATGGTGCTAACTATGTGCCTTTGGCTGAATGGTGGGGTTATGGCCTCCTCATCTCTGTTGTGAACATCGTTATTTGGCTTGGACTTGGAGGAGTGTGGTGGAAATTCTTGGGCTTATGGTAA___TTTGTTGAAACAACGAGCTTGTGCTGAAAAGCAAATAATCTAGAAGTACAAGTTTTAGGAAATCTTGAACATGTCAAAATATCTGAGTTTGGTCCGAATTTTCAGTTCTTGACTGAGAGTCAATCTTGTGTTTCTCCATCTCATATCAATAATGGGTCCGGGCCAGGGTAATTGTAATAATGTTGATTTTCTAACCAGCAATTCATTCTTTTGGGATATAATATAGTTTTTACTGTGGTCCTTGCTCCTGCTAAGGCTGTAGATCAACTACTATATATTTGTGCTAAACTTGCCAAGGACGATGGTAATATTTACACATGCAGATTATCAGAGTAGGAAATCACTTTTGAGAGTGCTTTTACAGAAGAACAATAGATTATAAAATGTGCAAATGATCAAGTTGCATTATTTTGTGCTTGACCTTGATAGAGTTGCGAATTGCAGTAATTGTGCAATGGACTTTTTATATTTTTTATTCTACAAGTACTGTTGTGCAAGCC

Fln Alignment:

sp_v1.1_unigene1906___TVGIRAPHISTVQRNHHNHXXXXXXXXXXXXXXXXXFLQCRDSISRPHAAAGRSSLVSSWWGRQQQIQEQKRPLFAPLEGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LKPLAASIATGVILWLVPAPAGVAKNAWQLLAIFLATIVGIITQXXXXXXXXXXXXXXXXXTKTLTFAAAFSAFGDQIPWLIALAFFFARGFIKTGLGNRIAYQFVAXXXXXXXXXXXXXVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNVGDGTERRLGSWLMLTCFQTSVISSAMFLTAMAANPLSVNLAAGAIGQTIGWTDWAVAAXXXXXXXXXXXXXXXXXXXXXXXKSSPDAPKLAKEKLEKMGPMTKNETIMSATLLVTVGLWIFGGMLKVDAVTAAILGLSVLLCTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLISWFSQTVVKVVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPLFGAMVLAFLSNIMGGLTHYGIGSAPVFYGANYVPLAEWWGYGLLISVVNIVIWLGLGGVWWKFLGLW
A9NVU0______________TVGIRAPHISAVQLNHHHHRSPPLSSIALAAAPARPFLQCRDSISRPHAAAGRNSLVSLWWGRQQKIQEQKRPLFAPLEGLRRRRPVKAPPTASPRASSAAVTPPPPAPPAQPWQGAALKPLAASIATGVIMWLVPAPAGVTKNAWQLLAIFLATIVGIITQPLPLGAVALMGLGAAVLTKTLTFAAAFSAFGDQIPWLIALAFFFARGFIKTGLGNRVAYQFVALFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNVGDGTEGRLGSWLMLTCFQTSVISSAMFLTAMAANPLSVNLAASAIGQTIGWTDWAVAALVPGLVSLIVVPLLLYVIYPPSVKSSPDAPKLAREKLQKMGPMTKNEIIMSGTLLVTVGLWIFGGMLKVDAVTAAILGLSVLLCTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLISWFSQTVVKVVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPLFGAMVLSFLSNLMGGLTHYGIGSAPVFYGANYVPLAQWWGYGFLISVVNIVIWLGLGGVWWKVLGLW

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
592	40		60		1.0
607			40	60	1.0
687		66	33		0.997452
709		25		75	0.996473
871		88		11	0.923564
973		12		87	0.992554
1120	11	88			0.923564
1154	87		12		0.992554
1158			87	12	0.992554
1160	12			87	0.992554
1161		12	87		0.992554
1162		12	87		0.992554
1163	87			12	0.992554
1164		87		12	0.992554
1167	87	12			0.992554
1170		12	87		0.992554
1171	12		87		0.992554
1172		12	87		0.992554
1343		20		80	0.999996
1351		77	22		0.999999
1638			12	87	0.992554
1639			12	87	0.992554
1640			12	87	0.992554
1642		12		87	0.992554
2101		18	81		0.999994
2118	90		10		0.90298
2126		10		90	0.90298
2127	10			90	0.90298
2128			11	88	0.923564
2129			11	88	0.923564
2131		11		88	0.923564
2160	80		20		0.995493
2164	83		16		0.994512
2167			16	83	0.994512
2342	10		90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain