SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1897

Length: 1405 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1897

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tim17 domain containing protein	-	-	8.0e-06	23%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24	IPR003397	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A882

Fln msg:

Fln protein: MAAKDDSGEVVQKDTARKKASIDWGATTIIGVIAGLLYGGSREALASASKDAEVMLKLGSTPDKREQYRVMRDAMEKRFIRVARGSILGGAKLGLFTACFSGLQHFLAEKRGVNDAFNIAGAGSATAAAFGLLLPGSLRWRARNVLAGSVLGAAVGLPLGWVQVRLVESAKERIASMPLNVEDTENVKKSRVAATIDRLEETFTK*

Protein Length: 207

Fln nts: ATGGGGATTGTCGAGTTGAGTCTGTAACCTAAAACGAGATTTACTTATAAATTGGTGTTAAATCTCGGTACTTAATGTTGTCCATTTACATCGAAAACTTGGATGCATGCAGGCGCAATTAATGTGATATGAAGTTACAGGGGTCAATTTGACAGTTCGTCGCCGCACCTGGATGCTATGCAAATGCAATCGCTGTCAAACAAACTTCAACCCATGTAAGGAGGATTCCTGTGTTTACTACGAATTGCCCAGACAGATTATCTGCAAAATTAGGCCAATTCTCTGATCTCCAATAGCTTGACTGCTCTTCCGGGGCTTCAATTATTTGTTATAAGTTCGTTCGAAATGGTATGAATTAGCAAGGATAAGGAATGTGTGAAGGACTCATTTTTAATCGGAAAGAGTGTATCAGTGTCTATAGAAGGTTGCTTCAACAAAGATAATCAAGT_-_ATGGCAGCAAAAGATGATTCTGGAGAAGTTGTACAGAAGGACACAGCAAGGAAAAAGGCGAGTATAGACTGGGGAGCCACAACAATAATAGGTGTTATTGCTGGGTTGCTATATGGGGGCAGCAGAGAAGCACTTGCATCGGCTAGCAAAGATGCAGAGGTAATGTTAAAACTTGGAAGCACACCTGACAAGAGAGAACAGTACAGAGTGATGAGGGATGCCATGGAGAAGAGGTTCATAAGAGTGGCCCGTGGATCTATTTTAGGAGGGGCAAAGCTTGGTTTATTTACCGCATGTTTTAGTGGTCTGCAACATTTTCTTGCAGAAAAACGAGGTGTAAATGATGCATTTAATATTGCTGGAGCTGGTTCTGCAACTGCTGCAGCATTTGGACTCCTATTGCCTGGATCCCTCCGTTGGCGTGCTAGAAATGTGCTGGCAGGTTCAGTTCTAGGTGCAGCAGTAGGCCTGCCACTTGGTTGGGTTCAAGTTCGACTTGTTGAGAGTGCAAAAGAAAGGATTGCTTCTATGCCACTGAATGTGGAAGACACTGAGAATGTCAAGAAAAGTAGAGTTGCTGCCACAATTGATAGACTCGAGGAAACTTTCACTAAGTAG___GCTATCACTGAATCAGTCGTGCCAAAATTTGTTAGAGCTGGTTCCTATAATGTTCCATGAAATCTTTTTATGGACTTATATGCCCTAGTCACCATCAAAGATGTATACTGAAATCTCAGTTTATCACCTTCTATGTTACATTTACACACAGTAACTCTGAACGGATTTATTGCATACAATAATTCACCTGTATTGAGGGTCGTTTTCCACCTCATAATAACTGTTCCTTTCTTAACGTAAACAAGCTCCGTTTGCTATTTGTTGATATATATAGGATTTATTGCAGACGGTAATTCAGCTGTATTTAGGGTTGTTTTCCACCTCATAATAACTGTTCC

Fln Alignment:

sp_v1.1_unigene1897___MAAKDDSGEVVQKDTARKKASIDWGATTIIGVIAGLLYGGSREALASASKDAEVMLKLGSTPDKREQYRVMRDAMEKRFIRVARGSILGGAKLGLFTACFSGLQHFLAEKRGVNDAFNIXXXXXXXXXXXXXXXPGSLRWRARNVLAGSVLGAAVGLPLGWVQVRLVESAKERIASMPLNVEDTENVKKSRVAATIDRLEETFTK
D5A882______________MAAIDDSVEVVQKDAARKKANIDWGATTVIGVIAGLLYGGSREALASASKDAEVMLKLGSTPDKREQYRVMRDAMEKRFIRVARGSILGGAKLGLFTACFSGLQHLLAERRGVHDAFNIAGAGSATAAAFGLLLPGSLRWRARNVLVGSVLGAAVGLPLGWVQVRLVESAKERIASMPPNAEDTENVKKSRVAATIDRLEETFTK

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
415			75	25	0.996473
554		83		16	0.994512
601	83		16		0.994512
602	83		16		0.994512
905			30	70	1.0
906	70			30	1.0
907		30	70		1.0
913		30	70		1.0
914		90		10	0.90298
915	70			30	1.0
925		70		30	1.0
966	81			18	0.999994
1227	14			85	0.993533
1228	14	85			0.993533
1231	85		14		0.993533
1232	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain