SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1880

Length: 1319 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1880

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc binding dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RX93_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	80%

Source	InterPros	Term	Type	Identity
Blast2go	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	80%
Blast2go	GroES-like	IPR011032	-	80%
Blast2go	Alcohol dehydrogenase, C-terminal	IPR013149	-	80%
Blast2go	Alcohol dehydrogenase GroES-like	IPR013154	-	80%
Blast2go	NAD(P)-binding domain	IPR016040	-	80%
Blast2go	Polyketide synthase, enoylreductase	IPR020843	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP99

Fln msg:

Fln protein: MIRIARRSIEYAINSSISTLKNANTRLISTCRAVVLPRFGGPEVLELRHNVGLPDLGASEVLVRTAAVGINPLDCRMRSGYGRSLFEPLLPLILGRDVSGEVAAIGSSVRQLYVGQEVFGALHPTAVRGTYSDYAVLTEDELVPKPPSVTHVEASAIPFAALTAWRALKSTARISPGQRVLVIGGGGAVGLAAIQLSVEAGCKVVTTCGKLSIDRVMAAGAEKAIDYTSEGLRAKLEGRFDAVLDTIGLPETELLGVDLLKRGGNYMTLQGEAVSLADKYGLVVGGAAATAKLLKKQVQYRQSHGVEYWWTYMRSDFEGLEEIARLTRAGKMKIPVEKTFSMGEAVEAHRVKDSKLVRGKVVLEIE*

Protein Length: 368

Fln nts: ATGGGGTTTAATGCACAAAGATTCGGGTGTCAGTGCAAATGGATCCAAGAAGTAAAAATGCCCCTCTAATGCAAGCGAGGACGTCCCAACTGTAGCATTGCAGAAGTTTAAGTCAGACCCCGGAGTGCCACCGTCAGGATTTGATCAAAATCACAAGCAATATTTTTCAAAAAA_-_ATGATTAGAATAGCTAGGAGATCAATTGAGTATGCAATTAACAGTTCAATATCAACACTGAAAAACGCGAATACCAGATTAATTTCCACATGCAGAGCAGTTGTCTTGCCTAGATTTGGTGGGCCAGAGGTTTTGGAGCTGCGTCACAATGTTGGTCTCCCGGATTTAGGAGCTTCAGAGGTGCTGGTTCGGACTGCTGCAGTAGGAATCAATCCTCTGGATTGTCGGATGCGATCTGGATATGGTCGGTCCTTATTTGAGCCACTTCTACCTCTGATTTTGGGCCGAGATGTCAGCGGTGAAGTTGCAGCCATAGGAAGTTCAGTTAGGCAGTTATATGTAGGCCAAGAAGTTTTTGGAGCTCTTCATCCCACAGCAGTAAGAGGTACTTACAGTGATTATGCTGTACTAACAGAGGATGAGCTTGTGCCGAAGCCACCTTCAGTTACTCATGTGGAAGCAAGTGCAATACCTTTTGCTGCGTTGACTGCATGGCGAGCTTTAAAAAGCACTGCTCGAATAAGTCCAGGACAGAGGGTACTTGTAATAGGAGGTGGAGGGGCAGTTGGTCTTGCCGCAATACAGCTGTCAGTGGAAGCTGGGTGTAAAGTTGTAACTACTTGTGGCAAACTAAGCATAGACCGTGTTATGGCAGCAGGAGCAGAGAAGGCTATTGACTACACATCAGAGGGCTTGAGAGCAAAATTGGAGGGACGATTTGATGCTGTCCTAGATACAATTGGCCTGCCGGAAACTGAACTGTTGGGTGTTGATCTTCTCAAGAGAGGTGGAAACTACATGACTCTTCAGGGAGAGGCAGTTTCGTTGGCAGATAAGTATGGTCTTGTTGTTGGAGGTGCTGCAGCTACTGCTAAATTATTGAAGAAACAAGTCCAATATCGACAATCACATGGAGTGGAATATTGGTGGACCTACATGAGAAGTGACTTTGAGGGACTGGAGGAGATTGCAAGATTGACTAGAGCTGGGAAAATGAAGATACCTGTAGAGAAAACATTCTCAATGGGAGAAGCTGTAGAGGCTCATCGTGTTAAAGACAGCAAACTTGTTCGTGGGAAAGTTGTTCTTGAAATTGAATGA___CAGTTCTTGTAGTCATCTTTTATAGTTTTATCTGGTCCAACTTG

Fln Alignment:

sp_v1.1_unigene1880___MIRIARRSIEYAINSSISTLKNANTRLISTCRAVVLPRFGGPEVLELRHNVGLPDLGASEVLVRTAAVGINPLDCRMRSGYGRSLFEPLLPLILGRDVSGEVAAIGSSVRQLYVGQEVFGALHPTAVRGTYSDYAVLTEDELVPKPPSVTHVEASAIPFAALTAWRALKSTARISPGQRXXXXXXXXXXXXXXXQLSVEAGCKVVTTCGKLSIDRVMAAGAEKAIDYTSEGLRAKLEGRFDAVLDTIGLPETELLGVDLLKRGGNYMTLQGEAVSLADKYXXXXXXXXXXXXXXXXXXXYRQSHGVEYWWTYMRSDFEGLEEIARLTRAGKMKIPVEKTFSMGEAVEAHRVKDSKLVRGKVVLEIE
B8LP99______________MIRIPRRSIDYVTNSSISTLKNANTRLISTCRAVVLPRFGGPEVLEVRHNVGLPDLGASEVLVRTAAVGINPLDCRMRSGYGRSLFEPLLPLILGRDVSGEVAAIGSSVRQLHVGQEVFGALHPTAVRGTYSDYAILSEDELVPKPPSVTHVEASAIPFAALTAWRALKSTARISTGQRVLVIGGGGAVGLAAIQLSVAAGCKVVTTCGKLSIDRVMAAGAEKAIDYTSEDLRTKLEGRFHAVLDTIGLPETEILGVDLLKRGGNYMTLQGEVVSLADTYGLVVGGAAASAKLLKKQVQYRQSHGVEYWWIHMRTDFEGLEEIARLTRAGKMKIPVGKTFPLGEAAEAHHVKESKLASGKVVLEIE

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
346	80	20			0.995493
347			80	20	0.995493
348		80		20	0.995493
403			83	16	0.994512
587	80			20	0.995493
590			80	20	0.995493
668		16		83	0.994512
922		25	75		0.996473
925	25		75		0.996473
935	25	75			0.996473
1084	87		12		0.992554
1107		62		37	1.0
1109		37		62	1.0
1119		37	62		1.0
1123		62		37	1.0
1129	50		50		1.0
1135			83	16	0.994512
1138	50		50		1.0
1150	83		16		0.994512
1151		50		50	1.0
1157	80		20		0.995493
1161	40	60			1.0
1185	50		25		0.995533
1186	25		75		0.996473
1190	66		33		0.997452
1196		33		66	0.997452
1199	66	33			0.997452
1212		33		66	0.997452
1224	33		66		0.997452
1227		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain