SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1877

Length: 1077 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1877

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	defective chloroplasts and leaves protein-related / DCL protein-related	-	-	2.0e-34	39%
FL-Next	sp=Protein DCL, chloroplastic; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	0.0	47%
Blast2go	protein	-	-	1.51573e-36	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	1.51573e-36	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Copper amine oxidase, N2/N3-terminal	IPR015801	-	1.51573e-36	67%
Blast2go	Protein of unknown function DUF3223	IPR021602	-	1.51573e-36	67%

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
565	33		66		0.997452
659			28	71	1.0
662			28	71	1.0
664		28	71		1.0
665	71	28			1.0
666	71			28	1.0
669	71		28		1.0
670	71	28			1.0
677		71		28	1.0
679	28	71			1.0
695			10	90	0.90298
696		22		77	0.999999
697			11	88	0.923564
698	77		11	11	0.968132
699			11	88	0.923564
700	88	11			0.923564
701	11	11	77		0.968132
702	77	22			0.999999
703	77			22	0.999999
704		88		11	0.923564
705	11		88		0.923564
711			11	88	0.923564
714	11		88		0.923564
715		11	88		0.923564
719	11	88			0.923564
858	87	12			0.992554
861	85	14			0.993533
865	85	14			0.993533
868	85		14		0.993533
869			14	85	0.993533
872	85		14		0.993533
877	85	14			0.993533
880	14			85	0.993533
970	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain