SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1874

Length: 2270 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1874
GATCAAAGATGATTGCTTTTTCCATTACGGGCAAAAATTTACACAGGTAGCGCCTGTGCTGGAGTGCAGTCGGCTGCTGAAAATCCTCATGGCCGGATGATGTGAGGTGTGCCCGATATGAAAAACTGAAATAACCTGCCTTGGCAAAGCACTCGACAGCTGGACTCCAGCCTGAGATTTTTCTGCAGGGAGCATTATGAAGCAAACATACTGGAAACACAACCAAGTTGAATGTAAGTGGAACTTGTGTTTCTTGGATATGGACTGCATTTTTGACGATGTCTAAAGTTTGAACTCTGATAAAGATCTAGGTTCCTGTTGTCCCTAGGTTTCAGCACCAGAATGGGGCTTATGCATTGGATTTAAAAGCCTCAGCCATGACTTTTTTATTTGGAGACACAGAGCTAAAGTCCATCTTAGTCGTGTAATTTGGTTGTGGCTTAGATTTATCAATCTGAGGTTTGCTGCAATTCCAAATTCCTATCCCTTGCAGGTAGATGAGGTCAGTATTTTTTTGGGGGATGATTTCTAGATTTCCGTTCAACTGATAAATGATTGAAGCTTACCATTCCAATCAGTAGCAAAGTTCTCATGGGGCCTATACTTAGCATCTTTTTCTTATACAGCCATCTTATACTTGGTAATTAATGAGCAAGCGAAGGTTCTAGGAATTACTCAACTGAAACACAGGTGAAAAATTGCAAAACTGTGGGCAGAGATTGATCTGGTTATAGGATTATGCATTTGCACTCTGATTGCAGAGTTATATTTGAGCCCTAAGTCTCACTAGGTCAAAGGAAAAATCATAATCATAATTTGAAAGTGATGGGGAGCAAAGAAGAATTGTTATCTGCTGCTAAAATAGGTGCAAAAGTTGAGAGAGTTCCTTCTTTTTGTGGGACTGAAAATAAGCAATTATCCACTGGTTCATATCAAGGCCAAGATGATGATACTTTGGAGGTCTGTAGAGTATGCCACTGTACAGAACCTGACAAAAAGGGGGAAGCTGCTCTTGAGTTTTTGGGAATCTCCACCCCTTCAAGGGACAGGTCACAGAGATTCAGTGTGAAGCCCCCGATTGCTAAAAATGATGCAAAGGGTGTACATAATGATGTACATAGCACTGAAAAAAAGAGAGAAGAAATTGACTATGTTGAGTATAAAAGTCCTGATGGAGAGGTGTTTGTTTGTGGCAGTGATTTAGAAGCAGGTTCAGGCTTCTGTCATCAGAATACTCTCATTGAGTTAGGTTGTTTATGCAAGAATGATCTTTCGTTAGGTCATTACGCCTGTGCTTTACGGTGGTTTATTAGCCATGGATCAGTTATATGTGAAATATGTGGGAGTGTAGCAGAAAATATCAAGCTTTCAGACATGAACAGAGTTATGGCAGCTCTAAGTGAGTGTGAAACATTGAGGTCGAGGACAGCTGCTGGAGAGATGACTCCAGCATCTACCCAGTGGCATGCTGCTGTGGATCCAGATGCAGTAGCTGCAGTAAGGAGACAGCGACTTACTGAAATTGCATCATGGTTTAATCCACGCATTCATGCGGCAGTTTCACAAGTGGCCAGTGATGAGGCATCTATTGCTCCTAGTGATGATATGCATCCTAATATACATCCAGCTACAAAATGGGTAGTAGAGGGCACTGGAATACTGGTTGCTACTGGGTTGTTGACTATTACTCTTGCTTGGTTGATTGCCCCTCGGGTTGGAAAGAAAACAGCAAAGAGTGGTTTAAATATTCTACTCGGAGGTCTATGTGCGCTGACAGTTGTGGTTTTCTTGCGCTTTGCCGTGCTGCCCAGGATCAAGTGTGGACGAGCTCGGTATTGGGCGATCACATTTGTTTTTATGTTCCTAGTTTTTGGTATTTGGGCTTCAAGGACAAGAAGTACACGATCGTCTTGATTATATTGTTATTTAATATCATGTACAGAAAAAGATCAGCTTGCATAAAACAATCTGTAGTATTAGACTCATTCTTCTTAACCACTGAAGATGACGTGAGGGATTATGGGTAGTGTTGGTTACGTAAAACAATCTATAGTATTAGACTTAATTATTCTTAACCACTGAAGGTGTCATCCGGGATTATGGGTGGTGTTATTCTATGATAGAACAATAGTCACATATCGATCATTAAGTCTTCGGAGCTCTGCATGAATTACGTTTGTTGGTATTCTATTGTAAATATTGCTGATCTAATTTCAAGATATTTTGAAATGATTCTTGATGAATCAGCTTTTAGTGCAACTGTCAACTTC

Ace file of the UniGene sp_v1.1_unigene1874

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	zinc finger (C3HC4-type RING finger) family protein	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	53%
Blast2go	zinc finger family protein	-	-	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	maintenance of shoot apical meristem identity	GO:0010492	Biological Process	0.0	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6H4F1

Fln msg:

Fln protein: MGSKEELLSAAKIGAKVERVPSFCGTENKQLSTGSYQGQDDDTLEVCRVCHCTEPDKKGEAALEFLGISTPSRDRSQRFSVKPPIAKNDAKGVHNDVHSTEKKREEIDYVEYKSPDGEVFVCGSDLEAGSGFCHQNTLIELGCLCKNDLSLGHYACALRWFISHGSVICEICGSVAENIKLSDMNRVMAALSECETLRSRTAAGEMTPASTQWHAAVDPDAVAAVRRQRLTEIASWFNPRIHAAVSQVASDEASIAPSDDMHPNIHPATKWVVEGTGILVATGLLTITLAWLIAPRVGKKTAKSGLNILLGGLCALTVVVFLRFAVLPRIKCGRARYWAITFVFMFLVFGIWASRTRSTRSS*

Protein Length: 364

Fln nts: GATCAAAGATGATTGCTTTTTCCATTACGGGCAAAAATTTACACAGGTAGCGCCTGTGCTGGAGTGCAGTCGGCTGCTGAAAATCCTCATGGCCGGATGATGTGAGGTGTGCCCGATATGAAAAACTGAAATAACCTGCCTTGGCAAAGCACTCGACAGCTGGACTCCAGCCTGAGATTTTTCTGCAGGGAGCATTATGAAGCAAACATACTGGAAACACAACCAAGTTGAATGTAAGTGGAACTTGTGTTTCTTGGATATGGACTGCATTTTTGACGATGTCTAAAGTTTGAACTCTGATAAAGATCTAGGTTCCTGTTGTCCCTAGGTTTCAGCACCAGAATGGGGCTTATGCATTGGATTTAAAAGCCTCAGCCATGACTTTTTTATTTGGAGACACAGAGCTAAAGTCCATCTTAGTCGTGTAATTTGGTTGTGGCTTAGATTTATCAATCTGAGGTTTGCTGCAATTCCAAATTCCTATCCCTTGCAGGTAGATGAGGTCAGTATTTTTTTGGGGGATGATTTCTAGATTTCCGTTCAACTGATAAATGATTGAAGCTTACCATTCCAATCAGTAGCAAAGTTCTCATGGGGCCTATACTTAGCATCTTTTTCTTATACAGCCATCTTATACTTGGTAATTAATGAGCAAGCGAAGGTTCTAGGAATTACTCAACTGAAACACAGGTGAAAAATTGCAAAACTGTGGGCAGAGATTGATCTGGTTATAGGATTATGCATTTGCACTCTGATTGCAGAGTTATATTTGAGCCCTAAGTCTCACTAGGTCAAAGGAAAAATCATAATCATAATTTGAAAGTG_-_ATGGGGAGCAAAGAAGAATTGTTATCTGCTGCTAAAATAGGTGCAAAAGTTGAGAGAGTTCCTTCTTTTTGTGGGACTGAAAATAAGCAATTATCCACTGGTTCATATCAAGGCCAAGATGATGATACTTTGGAGGTCTGTAGAGTATGCCACTGTACAGAACCTGACAAAAAGGGGGAAGCTGCTCTTGAGTTTTTGGGAATCTCCACCCCTTCAAGGGACAGGTCACAGAGATTCAGTGTGAAGCCCCCGATTGCTAAAAATGATGCAAAGGGTGTACATAATGATGTACATAGCACTGAAAAAAAGAGAGAAGAAATTGACTATGTTGAGTATAAAAGTCCTGATGGAGAGGTGTTTGTTTGTGGCAGTGATTTAGAAGCAGGTTCAGGCTTCTGTCATCAGAATACTCTCATTGAGTTAGGTTGTTTATGCAAGAATGATCTTTCGTTAGGTCATTACGCCTGTGCTTTACGGTGGTTTATTAGCCATGGATCAGTTATATGTGAAATATGTGGGAGTGTAGCAGAAAATATCAAGCTTTCAGACATGAACAGAGTTATGGCAGCTCTAAGTGAGTGTGAAACATTGAGGTCGAGGACAGCTGCTGGAGAGATGACTCCAGCATCTACCCAGTGGCATGCTGCTGTGGATCCAGATGCAGTAGCTGCAGTAAGGAGACAGCGACTTACTGAAATTGCATCATGGTTTAATCCACGCATTCATGCGGCAGTTTCACAAGTGGCCAGTGATGAGGCATCTATTGCTCCTAGTGATGATATGCATCCTAATATACATCCAGCTACAAAATGGGTAGTAGAGGGCACTGGAATACTGGTTGCTACTGGGTTGTTGACTATTACTCTTGCTTGGTTGATTGCCCCTCGGGTTGGAAAGAAAACAGCAAAGAGTGGTTTAAATATTCTACTCGGAGGTCTATGTGCGCTGACAGTTGTGGTTTTCTTGCGCTTTGCCGTGCTGCCCAGGATCAAGTGTGGACGAGCTCGGTATTGGGCGATCACATTTGTTTTTATGTTCCTAGTTTTTGGTATTTGGGCTTCAAGGACAAGAAGTACACGATCGTCTTGA___TTATATTGTTATTTAATATCATGTACAGAAAAAGATCAGCTTGCATAAAACAATCTGTAGTATTAGACTCATTCTTCTTAACCACTGAAGATGACGTGAGGGATTATGGGTAGTGTTGGTTACGTAAAACAATCTATAGTATTAGACTTAATTATTCTTAACCACTGAAGGTGTCATCCGGGATTATGGGTGGTGTTATTCTATGATAGAACAATAGTCACATATCGATCATTAAGTCTTCGGAGCTCTGCATGAATTACGTTTGTTGGTATTCTATTGTAAATATTGCTGATCTAATTTCAAGATATTTTGAAATGATTCTTGATGAATCAGCTTTTAGTGCAACTGTCAACTTC

Fln Alignment:

sp_v1.1_unigene1874___EELLSAAKIGAKVERVPSFCGTENKQLSTGSYQGQDDDTLEVCRVCHCTEPDKKGEAALEFLGISTPSRDRSQRFSVKPPIAKNDAKGVHNDVHSTEKKREEIDYVEYKSPDGEVFVCGSDLEAGSGFCHQNTLIELGCLCKNDLSLGHYACALRWFISHGSVICEICGSVAENIKLSDMNRVMAALSECETLRSRTAAGEMTPASTQWHXXXXXXXXXXXRRQRLTEIASWFNPRIH-------AAVSQVASDEASIAPSDDMHPNIHPATKWVVEGTGILVATGLLTITLAWLIAPRVGKKTAKSGLNILLGGLCALTVVVFLRFAVLPRIKCGRARYWAITFVFMFLVFGIWA
F6H4F1______________ENHLQPINVGKSHEGHPYIENEESGVCST-RHSIDKEAGLATCRVCQCAESDRRGEAALGFLGITPPVQEARKSDELIKTNSKEVLKEAEDYASPTKNGRRESDFVEFVSPQGEVFICNTDIEMGSCH-HQDTLIELGCSCKNDLALVHYACALKWFVNHGSTICEICGCIAKNVRTSDFKKVVGSLKEYEALRERTASGEPV-VQVRTNLGVDPDAVAAIQRQRLSEISLWFNPHNNNNNNNNSAVASQVVSEQHLNIVAEDFVPAENPATKWAVEGTGILLATGLLTVTLAWLIAPRVGKKTAKSGLHILLGGICALTVVVFFRFIVLTRIKYGPARYWAILFVFWFLVFGIWA

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
1270	87			12	0.992554
1271	87	12			0.992554
1275		12		87	0.992554
1279			12	87	0.992554
1283		12		87	0.992554
1285		12	87		0.992554
1286			87	12	0.992554
1428	28		71		1.0
1440	20			80	0.995493
1443	80			20	0.995493
1474	20		80		0.995493
1495	12		75	12	0.975346
1496			12	87	0.992554
1497	87		12		0.992554
1528	87			12	0.992554
1740		33	66		1.0
2198		11		88	0.923564
2246	20			80	0.995493
2247		20	80		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain