SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1862

Length: 1722 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1862

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MADS-box protein n=7 Tax=Pinaceae RepID=A0S6W4_9CONI	-	-	99%
FL-Next	tr=MADS box transcription factor; Pinus resinosa (Red pine) (Norway pine).	-	-	100%
Blast2go	mads-box transcription factor	-	-	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transcription factor, MADS-box	IPR002100	-	0.0	90%
Blast2go	Transcription factor, K-box	IPR002487	-	0.0	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9ZTY6

Fln msg:

Fln protein: MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEFANHSVKRTIERYKKTCVDNNHGGAISESNSQYWQQEAGKLRQQIEILQNANRHLMGDGLTALNIKELKQLEVRLEKGISRVRSKKNEMLLEEIDIMQRREHILIQENEILRSKIAECQNSHNTNMLSAPEYDALPAFDSRNFLHANLIDAAHHYAHQEQTTLQLG*

Protein Length: 224

Fln nts: CAGCTTCTTCTTCTGCGCAATTTTTTCTGCTGGATCATCATCATTACCATCATCGCCATCCCCACCATCATCactATGATGGTATCTCTATCTCTCCCCGGCAATCAATCGTAGAGGAgaGGAAGAGGGAAGGGGCATATGTATTGATCAACCTACCCGAAAAAACAACCTGATCAGCCCTGCTAATCTTGCTTATAAATCTCTTATCCACTGTTCAATCATTCAGGTTTCTTCCCACTTTCAAGCAACGGCGCCCGGATTGGCCGTGTTCTTAGATTTTTAGAACTCGGGCTGCGTCCAACTGTGGGAACGAACCAGCACAAGGGCTTGCAGCTTTTGCTGTTGCTGTTGCGCCCATTGCTTTTGGACTGGTAATAGTAGTTGCAGGTTTGTTTTGCATACGCTGTGAGGATCTGTGCGCGGAAATTTTGTGTACAAATC_-_ATGGGTCGTGGGAAGATTGAGATAAAGAGGATTGAAAATACTACGAACCGACAGGTCACTTTCTGCAAGCGCCGAAATGGTTTATTGAAGAAAGCGTATGAATTATCAGTTCTTTGTGATGCAGAAGTGGCCCTCATCGTCTTCTCCAGCAGAGGGAGACTTTATGAATTTGCCAACCACAGCGTGAAGAGGACGATTGAGAGGTACAAGAAGACTTGCGTTGACAACAACCATGGAGGGGCGATTTCAGAGTCCAATTCTCAGTATTGGCAACAGGAGGCTGGTAAACTCAGACAACAGATTGAAATTTTGCAAAATGCAAATAGGCATTTGATGGGTGACGGGCTTACAGCTCTGAATATCAAGGAACTCAAGCAACTTGAGGTTCGACTTGAAAAAGGAATCAGCCGAGTACGATCCAAAAAGAACGAGATGTTGCTTGAAGAGATCGACATCATGCAGAGAAGGGAACACATACTTATCCAGGAGAATGAGATTCTTCGCAGCAAGATAGCCGAGTGTCAGAATAGCCACAACACGAACATGTTATCAGCTCCCGAATATGATGCATTGCCAGCATTCGATTCTCGAAATTTCCTACATGCAAATCTAATCGATGCGGCCCATCACTATGCACATCAGGAACAAACAACGCTTCAGCTTGGCTGA___ACGGTGAAGCGGTGGACGCTTAAAACTCAATCAAGGCACCCGAAAAATATGTTAGTAACCTTGAATGAGATTCAGAGTCCAAATATTGCGAGGCAAGAGCACAATGGAAGAGATAGCTCCTAGTATGAATATGGATTTATGATATTAACATATGGTTTGTCAGCTTTAAGTATAGCTGTTTGAAACAAAGAATACAACATATTAGCTAGTATTTTTTTGGCGCATGTTATCTTTCTGTTGAATATAATCGACGAAGCTTTACTTCTACATAGTTCCTTTTTTATGCCTATGCTGCGGTCAATTTAATCTTTGTCTCTCCTTATTTCGAAACACCAGTAGTATTTGATACTCCAAGAACATTGAAATCAGTACCCACTGGCAGAGAAAGGCAAGGGAATTAAGAGTCCGTTCCTGCAAAAAATTTGTACACGTATGTTTCGATTGTTAGCTTGTTGTAACCATGTAAATTTGCACACTTATGTCTCCATTGATAGCTTTGTGTAAGCATGTACGCAAATAAGCAGCTTGTTGATGTAGCTATCTTGGCGAGATTACCAGTATTATTTGATATTTCACGTGATAAAATTTTGAAATTAGTATCAGTTGGTAAAC

Fln Alignment:

sp_v1.1_unigene1862___MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEFANHSVKRTIERYKKTCVDNNHGGAISESNSQYWQQEAGKLRQQIEILQNANRHLMGDGLTALNIKELKQLEVRLEKGISRVRSKKNEMLLEEIDIMQRREHILIQENEILRSKIAECQNSHNTNMLSAPEYDALPAFDSRNFLHANLIDAAHHYAHQEQTTLQLG
Q9ZTY6______________MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEFANHSVKRTIERYKKTCVDNNHGGAISESNSQYWQQEAGKLRQQIEILQNANRHLMGDGLTALNIKELKQLEVRLEKGISRVRSKKNEMLLEEIDIMQRREHILIQENEILRSKIAECQNSHNTNMLSAPEYDALPAFDSRNFLHANLIDAAHHYAHQEQTTLQLG

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1388		60		40	1.0
1597	42	57			1.0
1609			42	57	1.0
1659		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain