SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1851

Length: 2485 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1851
ACAAACCCCATAATTAATGACATAGAAGACTAAACGCATTCGATGTGGGAATGAAGAGGAACAGACACTGCTGGTGAGGTCTCCAGCGCCTTCGTTGGCCCTCTCATTTCCTCGATCCGCCAGATGCGAGGCAACTGCTGCGAAATTCATCATCAACTGCTTGCATTTATTCTCCCTTCACTGCTTTAAGACTGTAAAATTTGGCGATTTCCACCTAGATTCTCTCCAATCTGGTTCGGAATTTTTGATCAGTTGGGGGTTTGCGGACCATTTGGGCAGATTCGTTGGGCTGCCTTTTCGCAGCGCGGGGAAGAGAGCCTCGATTCGTACAGACAGTAGAAACTGATTGAGGGGGCTTAAGTTGCGGTATTCTATTTATCGTCAACATGGTTACCATCCCTTATTTCGCAGCGCTTACGACGTATTTCAGTTATGGATTGCTTTTTGTGTTTGGACATATGAGGGATTTCTTCAGAAGCTTCCGCAAGTCGGATCAGTCCACTCCAGAGGGATATGCTCCACTCTGCAGGGACTTTGAGGACTTTTATACCCGTAGGTTGTATCATCGCATTCAGGATTGTTTCAACAGGCCTATTGCAAGTGCACCAGATGCTTGGATAGATGTGACAGAACGTTGTTCAAATGACAACAATAAGACACTATTTCGAACTGGAAAGACACATAGGTGCTTAAATCTTGGTTCCTACAACTATCTTGGATTTGCTTCAGCAGATGAGTATTGTACTCCACGTGTGATTGAGTCGCTTAAAAAGTTCTCTCCCAGCACATGCAGCAGTCGTGTTGATGCTGGTACTACTGTTTTGCATAAAGAACTTGAAGAGTTAGTTGCCAGCTTTGTTGGGAAGCCTGCTGCTATGGTTTATGGAATGGGGTTTGCAACAAACTCAACCACTCTTCCAGCATTGATCGGGAAGGGTGGACTCATAATAAGTGATTCCTTGAATCATGCTTCAATAGTTGCTGGTGCTCGAGCATCTGGATCAAGAATTGCTGTTTTTCAGCATAACACACCTTCACACTTGGAGGAAGTGCTTCGAGAAGCGATAGCAGAAGGTCAGCCTCGGACTCATAGACCTTGGAAGAAAATAATTGTTGTTGTGGAAGGGATTTACAGCATGGAGGGTGAATTATGCAAACTTCCAGAAATTGTAGCTGTCTGTAAGAAGTACAAGGCTTATTTATACTTGGATGAAGCGCATAGTATTGGAGCTGTTGGAAAAACAGGAAGGGGAATCTGTGAGCTTCTAGGAGTGGATACTTCTGATATTGATATTATGATGGGCACCTTCACGAAATCGTTTGGATCAAGTGGAGGTTACATTGCTGGATCCAAGGACCTCATTAAATACTTGAAGGCTGTCAGTCCTGGTCACCTCTATGCAACAGCTATGTCTCCACCTGCTGTGCAGCAGGTCATATCTGCTCTGAAAGTAATTCTTGGAGAAGATGGTTCAAATCGAGGAGCTCAAAAGCTTGCACGCATTCGAGAAAATAGCAATTTTTTCCGTGCTGAGTTGCAGAAGATGGGATGTGAGGTTCTGGGAGACCATGATTCACCTGTGATGCCAATAATGCTGTATAACCCAGCAAAAATTCCAGCCTTCTCTAGAGAATGCTTCAAACGCAATATTGCAGTGGTGACAGTTGCCTTTCCTGCAACACCTTTGCTATTATCAAGGGTACGCATTTGCTTGTCTGCCGCACATACCAAGGAGGATCTGGTGAAGGCATTGGAAGTAATTAGTGAGGTTGGTGATATGGTTCATATAAAATATTTTCCAAGGGAACCAGAGAAACAGCTTAAAGAGGAGCAGTGGCAACAGAATGAAGCGAAGAAGCTTTCTTAAACTCAAGCTGAGTCTTGTTATTACTGGCTTGACTGGCACCATGCTTGTTGATGCTGCTGCTGAAGCTTCCTACTACTGATGCGCTTGATGATTTGTTTTGAAGATGTCCAAGGGAATGCCTTTTGATGGCAATGTATTGTAAGACTGAAAACACATTTTATTGTGTAGATTAGCAAGCAAGATCATTACTTCTTCTAAGAGACTGAATGAACGTGTTCAATAGATACCCTCAAACATGTGGCTTGACTACATCTATTCCGGATTGTGTACCTGTAAATATACAGTTTTGACTGATTTATATTGATAGACTGTGCATTTTAGGGTCTTGAATGAACATGTGATAGAAGTTTCTCAATAAACTCGGGAGGGTTTCTCAATAAATTATTGCAAAGCTTCTATGTATAGTGTAGCATGTCATGCTAGAGGAGGTAAATACTGCCTTCAATTCTTCTGCCTTTTGAAATGTTCCATGAATTTTCTGTATGACATTCAGAACATTTCTGGGTCTTGGACAGGTTTACTGTTTCTAGGGCTGGCATAAATACAGTTTATATACACAATATCTGTGATATGAGGATGATTTTTTTTACATTATCCATCCATCATTATTCTTAGCG

Ace file of the UniGene sp_v1.1_unigene1851

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	serine palmitoyltransferase (EC:2.3.1.50); K00654 serine palmitoyltransferase [EC:2.3.1.50]	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	serine palmitoyltransferase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.3.1.5-	-	0.0	87%

Source	ECs	Term	Type	e value	Identity
AutoFact		EC:2.3.1.5-	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	pollen development	GO:0009555	Biological Process	87%
Blast2go	sphingosine biosynthetic process	GO:0046512	Biological Process	87%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	serine C-palmitoyltransferase activity	GO:0004758	Molecular Function	87%
Blast2go	membrane	GO:0016020	Cellular Component	87%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Blast2go	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	87%
Blast2go	Aminotransferase, class I/classII	IPR004839	-	87%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	87%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	87%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRT9

Fln msg:

Fln protein: MVTIPYFAALTTYFSYGLLFVFGHMRDFFRSFRKSDQSTPEGYAPLCRDFEDFYTRRLYHRIQDCFNRPIASAPDAWIDVTERCSNDNNKTLFRTGKTHRCLNLGSYNYLGFASADEYCTPRVIESLKKFSPSTCSSRVDAGTTVLHKELEELVASFVGKPAAMVYGMGFATNSTTLPALIGKGGLIISDSLNHASIVAGARASGSRIAVFQHNTPSHLEEVLREAIAEGQPRTHRPWKKIIVVVEGIYSMEGELCKLPEIVAVCKKYKAYLYLDEAHSIGAVGKTGRGICELLGVDTSDIDIMMGTFTKSFGSSGGYIAGSKDLIKYLKAVSPGHLYATAMSPPAVQQVISALKVILGEDGSNRGAQKLARIRENSNFFRAELQKMGCEVLGDHDSPVMPIMLYNPAKIPAFSRECFKRNIAVVTVAFPATPLLLSRVRICLSAAHTKEDLVKALEVISEVGDMVHIKYFPREPEKQLKEEQWQQNEAKKLS*

Protein Length: 495

Fln nts: ACAAACCCCATAATTAATGACATAGAAGACTAAACGCATTCGATGTGGGAATGAAGAGGAACAGACACTGCTGGTGAGGTCTCCAGCGCCTTCGTTGGCCCTCTCATTTCCTCGATCCGCCAGATGCGAGGCAACTGCTGCGAAATTCATCATCAACTGCTTGCATTTATTCTCCCTTCACTGCTTTAAGACTGTAAAATTTGGCGATTTCCACCTAGATTCTCTCCAATCTGGTTCGGAATTTTTGATCAGTTGGGGGTTTGCGGACCATTTGGGCAGATTCGTTGGGCTGCCTTTTCGCAGCGCGGGGAAGAGAGCCTCGATTCGTACAGACAGTAGAAACTGATTGAGGGGGCTTAAGTTGCGGTATTCTATTTATCGTCAAC_-_ATGGTTACCATCCCTTATTTCGCAGCGCTTACGACGTATTTCAGTTATGGATTGCTTTTTGTGTTTGGACATATGAGGGATTTCTTCAGAAGCTTCCGCAAGTCGGATCAGTCCACTCCAGAGGGATATGCTCCACTCTGCAGGGACTTTGAGGACTTTTATACCCGTAGGTTGTATCATCGCATTCAGGATTGTTTCAACAGGCCTATTGCAAGTGCACCAGATGCTTGGATAGATGTGACAGAACGTTGTTCAAATGACAACAATAAGACACTATTTCGAACTGGAAAGACACATAGGTGCTTAAATCTTGGTTCCTACAACTATCTTGGATTTGCTTCAGCAGATGAGTATTGTACTCCACGTGTGATTGAGTCGCTTAAAAAGTTCTCTCCCAGCACATGCAGCAGTCGTGTTGATGCTGGTACTACTGTTTTGCATAAAGAACTTGAAGAGTTAGTTGCCAGCTTTGTTGGGAAGCCTGCTGCTATGGTTTATGGAATGGGGTTTGCAACAAACTCAACCACTCTTCCAGCATTGATCGGGAAGGGTGGACTCATAATAAGTGATTCCTTGAATCATGCTTCAATAGTTGCTGGTGCTCGAGCATCTGGATCAAGAATTGCTGTTTTTCAGCATAACACACCTTCACACTTGGAGGAAGTGCTTCGAGAAGCGATAGCAGAAGGTCAGCCTCGGACTCATAGACCTTGGAAGAAAATAATTGTTGTTGTGGAAGGGATTTACAGCATGGAGGGTGAATTATGCAAACTTCCAGAAATTGTAGCTGTCTGTAAGAAGTACAAGGCTTATTTATACTTGGATGAAGCGCATAGTATTGGAGCTGTTGGAAAAACAGGAAGGGGAATCTGTGAGCTTCTAGGAGTGGATACTTCTGATATTGATATTATGATGGGCACCTTCACGAAATCGTTTGGATCAAGTGGAGGTTACATTGCTGGATCCAAGGACCTCATTAAATACTTGAAGGCTGTCAGTCCTGGTCACCTCTATGCAACAGCTATGTCTCCACCTGCTGTGCAGCAGGTCATATCTGCTCTGAAAGTAATTCTTGGAGAAGATGGTTCAAATCGAGGAGCTCAAAAGCTTGCACGCATTCGAGAAAATAGCAATTTTTTCCGTGCTGAGTTGCAGAAGATGGGATGTGAGGTTCTGGGAGACCATGATTCACCTGTGATGCCAATAATGCTGTATAACCCAGCAAAAATTCCAGCCTTCTCTAGAGAATGCTTCAAACGCAATATTGCAGTGGTGACAGTTGCCTTTCCTGCAACACCTTTGCTATTATCAAGGGTACGCATTTGCTTGTCTGCCGCACATACCAAGGAGGATCTGGTGAAGGCATTGGAAGTAATTAGTGAGGTTGGTGATATGGTTCATATAAAATATTTTCCAAGGGAACCAGAGAAACAGCTTAAAGAGGAGCAGTGGCAACAGAATGAAGCGAAGAAGCTTTCTTAA___ACTCAAGCTGAGTCTTGTTATTACTGGCTTGACTGGCACCATGCTTGTTGATGCTGCTGCTGAAGCTTCCTACTACTGATGCGCTTGATGATTTGTTTTGAAGATGTCCAAGGGAATGCCTTTTGATGGCAATGTATTGTAAGACTGAAAACACATTTTATTGTGTAGATTAGCAAGCAAGATCATTACTTCTTCTAAGAGACTGAATGAACGTGTTCAATAGATACCCTCAAACATGTGGCTTGACTACATCTATTCCGGATTGTGTACCTGTAAATATACAGTTTTGACTGATTTATATTGATAGACTGTGCATTTTAGGGTCTTGAATGAACATGTGATAGAAGTTTCTCAATAAACTCGGGAGGGTTTCTCAATAAATTATTGCAAAGCTTCTATGTATAGTGTAGCATGTCATGCTAGAGGAGGTAAATACTGCCTTCAATTCTTCTGCCTTTTGAAATGTTCCATGAATTTTCTGTATGACATTCAGAACATTTCTGGGTCTTGGACAGGTTTACTGTTTCTAGGGCTGGCATAAATACAGTTTATATACACAATATCTGTGATATGAGGATGATTTTTTTTACATTATCCATCCATCATTATTCTTAGCG

Fln Alignment:

sp_v1.1_unigene1851___MVTIPYFAALTTYFSYGLLFVFGHMRDFFRSFRKSDQSTPEGYAPLCRDFEDFYTRRLYHRIQDCFNRPIASAPDAWIDVTERCSNDNNKTLFRTGKTHRCLNLGSYNYLGFASADEYCTPRVIESLKKFSPSTCSSRVDAGTTVLHKELEELVASFVGKPAAMVYGMGFATNSTTLPALIGKGGLIISDSLNHASIVAGARASGSRIAVFQHNTPSHLEEVLREAIAEGQPRTHRPWKKIIVVVEGIYSMEGELCKLPEIVAVCKKYKAYLYLDEAHSIGAVGKTGRGICELLGVDTSDIDIMMXXXXXXXXXXXXYIAGSKDLIKYLKAVSPGHLYATAMSPPAVQQVISALKVILGEDGSNRGAQKLARIRENSNFFRAELQKMGCEVLGDHDSPVMPIMLYNPAKIPAFSRECFKRNIAVVTVAFPATPLLLSRVRICLSAAHTKEDLVKALEVISEVGDMVHIKYFPREPEKQLKEEQWQQNEAKKLS
B8LRT9______________MVTIPYFTALTTYFSYGLLFVFGHMRDFFRSFCKSDQSTPEGYAPLCRDFEDFYTRRLYHRIQDCFNRPIASAPDAWIEVSERYSNDNNETLFRTGKTHRCLNLGSYNYLGFASADEYCTPRVVESLKRFSPSTCSSRVDAGTTVLHQELEELIARFVGKPAAMVYGMGFATNSTTLPALIGKGGLIISDSLNHSSIVAGARASGSRITVFQHNTPSHLEEVLREAIADGQPRTHRPWKKIIVVVEGIYSMEGELCKLPEIVAVCNKYKAYLYLDEAHSIGAIGKTGRGICELLGVDTSDIDIMMGTFTKSFGSCGGYIAGSKDLIKYLKAVSPGHLYATAMSPPAVQQVISALKVILGEDGSNRGAQKLARIRENSNFFRAELQKMGCEVLGDHDSPVMPIMLYNPAKIPAFSRECLKRHVAVVGVAFPATPLLLARARMCLSASHTKEDLLKALEVISEVSDMVQIKYFPKDPEKQLKEEQWQQNERKKLS

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
116		75	25		0.996473
307		88		11	0.999937
977	80		20		0.995493
1105	90		10		0.90298
1107	90		10		0.90298
1175	88		11		0.923564
1208		88	11		0.923564
1209			11	88	0.923564
1210			12	87	0.992554
1565	10		90		0.90298
1898	5		94		0.998744
1903	94		5		0.998744
1907			94	5	0.998744
2324	10		70	20	0.999998
2325		90	10		0.90298
2431	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain