SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1844

Length: 2605 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1844
ATGGGCCCCCGATTTTATGGGATGTATTCTCAGAGCTTTCATATCTTTACTGAAAGTCCTTCGCTGCCATAGAGAATCGCATATCTAACTCAGTTATCCACGCGTTTCCTTCTTCGGAGAGGCCTCGATATCGAGTCCTGCAGCAGCAGTAGAAGGGTTTACAAAAAAAGATGGAGACGATGGAGATGCCAGTGCCTGCCCATCGCCTGGGCACCGATACCCAGCAGCTCAACATCGATTTTTCCAATGTTGACTTGGATTCAATACAGCTTCCTCCCGGCGAAGATTTTGGCATCAAAAGTGAGGATGAAGAGGAAGAAGAAGATTCACTAGAGTTCGAGACTGGGTTCGGTAACATTGTAGTTGTAGACAATCTCCCGGTAGTCCCTCCAGAGAAGTTTGAGAAACTCGAAGGTGTTGTTCGCAAGATATTTGGGCAGATTGGTACAATCAGGGAGAGGGGGCTCTGGATGCCACTCCACCCCGAGACCCAGAAGACTAAAGGATATTGTTTTATAGAGTACAACACCCCTCAGGAAGCACAGACAGCAAAAGATCAAACAAATGGATATAAGCTGGATAAATCCCATATATTTGCTGTTAACATGTTTGATGACTTTGATAAATATATGAAAGTATCAAATGAGTGGATTCCTCCAGAAACAAAGGCCTATACACCTGTGGAAAATTTACAACAATGGCTAACAGACGACAAAGGACGTGATCAATTTGTTGTTCGTGCTAACACTGACACTGAAGTTTATTGGAATGATCCTAGACAACTCAGACCAGAACTAGTCTACCGACGTGGATACTGGACTGAAAGCTTTGTCCAGTGGTCATCTCTCGGAACTTACCTCGCAACGGTGCACAGGCAGGGAGCAGCTATTTGGGGAGGTGCTACAACCTTTAACCGTCTGATGCGATTTGCACATCCACAGGTAAAATTGATAGATTTCTCTCCTGGTGAAAAATTCTTGGTTACTTACAGCAGTCACGAGCCAAGTAATCCTCGAGACACACAGAGGGTTACCCTCAACATTTTTGACGTGAGGACTGGTAAAGTATTGAGAGAGTTTAAAGGAAGTGCTGATGATTTTGCAACTGGTGGAACTGGTGGTGTTGCTGGTGTGTCTTGGCCTGTATTCAGATGGGCTGGTGGCAGAGATGACAAATACTTTGCCCGTATTGGAAAAAATGCTATCAGTGTTTATGAAACTGAAACTATGACTCTCCTAGATAAGAAGTCCATCAAAGTTGAAAATGTAATGGATTTCAGTTGGTCTCCAACAGATCCAATACTAGCCTTGTTTGTGCCAGAGGGAGGTGGGGGTAACCAACCTGCAAAAGTGAGTCTTGTACAAATCCCTGGAAGGGAAGAACTGAGACAAAAAAATCTCTTCAGTGTAAGTGATTGCAAAATGTACTGGCAAAGCAATGGAGACTACTTGGCAGTCAAAGTGGATCGCTATACCAAGACAAAAAAAAGTACATACACAGGTTTTGAACTTTTCCGAATTAAGGAAAGAGATATTCCCATAGAGGTCCTGGAATTAGAGAACAAAAATGACAAGATCATTGCATTTGCTTGGGAGCCCAAAGGCCACAGGTTTGCTATTATCCATGGGGATGGACCCAGGCCAGATGTTAGTTTCTATTCAATGAGGAGCCCTAATCATGTGGGCCGGGTTTTCAAGCTGGCTACCATCAAAGGAAAACAAGCAAACTCCCTTTACTGGTCCCCCATTGGACGGTTTATTATTCTTGCAGGTCTAAAAGCTTTAAATGGTCAGCTTGAATTTTACAATGTCGATGAATTGGAGACAATGGCAACTGGTGAACACTTCATGGCAACTGATATTGAGTGGGATCCTACTGGAAGATATGCTGCAACAGCAGTTACATCTGTGCATGAAATGGAAAATGGGTTTAACATATGGTCTTTCAATGGAAAGCTATTGTACCACGTTTCAAGAGATCATTTCTACCAGCTATTATGGCGACCGAGGCCACCCTCTCTTCTAAGCCCAGAGAAAGAGGAGGAGATCGCTAAGAATTTGAGGAAGTATAGTAAGAAGTATGAGGCTGAAGACCAGGATGTTTCGTTATTGTTGAGTGAGCAAGACAGGGAGAAACGGAAGAAATTACAAGAGGATTGGCAGGTCTGGGTCAATGAATGGAAACGTTTTCACGAGGAAGAGAAATTATTTAGACAGGAGCTACGTGATGGAGAGGCTAGTGATGAAGAAGAGGAATATGAAGCAGAAGAAGTTGAAGTTGAAGAGATCGTAGACGTTACTGAAGAGATTGCTTCATTTGGTTTTGAGCAGTTGGACTGATTGATTATATAGTATGCAGCTGCTTGTGCCTCCATACAGCCCTATGTTTGTGCCATTATGCAGACAGATAGCTTAGCTAGAAGATTCAGTGGTTTTTAATTGTTTTCCTGACCAGATTCATAATAGATGAGATACTCTTTTGTTGAAATTTTGTAGAATGGGCATTGAAATAGTCACTTTCTCAAAGGAAAAATTGCAGTGTGAAAGGTTGATCTATTATTCATTGAATGATCTAATGTTTCTAGGGTACTTTCTTGCATGTCGGG

Ace file of the UniGene sp_v1.1_unigene1844

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic translation initiation factor 3 subunit, putative; K03253 translation initiation factor eIF-3 subunit 9	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	eukaryotic translation initiation factor 3	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	nucleus	GO:0005634	Cellular Component	87%
Blast2go	cytosol	GO:0005829	Cellular Component	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWV8

Fln msg:

Fln protein: METMEMPVPAHRLGTDTQQLNIDFSNVDLDSIQLPPGEDFGIKSEDEEEEEDSLEFETGFGNIVVVDNLPVVPPEKFEKLEGVVRKIFGQIGTIRERGLWMPLHPETQKTKGYCFIEYNTPQEAQTAKDQTNGYKLDKSHIFAVNMFDDFDKYMKVSNEWIPPETKAYTPVENLQQWLTDDKGRDQFVVRANTDTEVYWNDPRQLRPELVYRRGYWTESFVQWSSLGTYLATVHRQGAAIWGGATTFNRLMRFAHPQVKLIDFSPGEKFLVTYSSHEPSNPRDTQRVTLNIFDVRTGKVLREFKGSADDFATGGTGGVAGVSWPVFRWAGGRDDKYFARIGKNAISVYETETMTLLDKKSIKVENVMDFSWSPTDPILALFVPEGGGGNQPAKVSLVQIPGREELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDGPRPDVSFYSMRSPNHVGRVFKLATIKGKQANSLYWSPIGRFIILAGLKALNGQLEFYNVDELETMATGEHFMATDIEWDPTGRYAATAVTSVHEMENGFNIWSFNGKLLYHVSRDHFYQLLWRPRPPSLLSPEKEEEIAKNLRKYSKKYEAEDQDVSLLLSEQDREKRKKLQEDWQVWVNEWKRFHEEEKLFRQELRDGEASDEEEEYEAEEVEVEEIVDVTEEIASFGFEQLD*

Protein Length: 724

Fln nts: ATGGGCCCCCGATTTTATGGGATGTATTCTCAGAGCTTTCATATCTTTACTGAAAGTCCTTCGCTGCCATAGAGAATCGCATATCTAACTCAGTTATCCACGCGTTTCCTTCTTCGGAGAGGCCTCGATATCGAGTCCTGCAGCAGCAGTAGAAGGGTTTACAAAAAAAG_-_ATGGAGACGATGGAGATGCCAGTGCCTGCCCATCGCCTGGGCACCGATACCCAGCAGCTCAACATCGATTTTTCCAATGTTGACTTGGATTCAATACAGCTTCCTCCCGGCGAAGATTTTGGCATCAAAAGTGAGGATGAAGAGGAAGAAGAAGATTCACTAGAGTTCGAGACTGGGTTCGGTAACATTGTAGTTGTAGACAATCTCCCGGTAGTCCCTCCAGAGAAGTTTGAGAAACTCGAAGGTGTTGTTCGCAAGATATTTGGGCAGATTGGTACAATCAGGGAGAGGGGGCTCTGGATGCCACTCCACCCCGAGACCCAGAAGACTAAAGGATATTGTTTTATAGAGTACAACACCCCTCAGGAAGCACAGACAGCAAAAGATCAAACAAATGGATATAAGCTGGATAAATCCCATATATTTGCTGTTAACATGTTTGATGACTTTGATAAATATATGAAAGTATCAAATGAGTGGATTCCTCCAGAAACAAAGGCCTATACACCTGTGGAAAATTTACAACAATGGCTAACAGACGACAAAGGACGTGATCAATTTGTTGTTCGTGCTAACACTGACACTGAAGTTTATTGGAATGATCCTAGACAACTCAGACCAGAACTAGTCTACCGACGTGGATACTGGACTGAAAGCTTTGTCCAGTGGTCATCTCTCGGAACTTACCTCGCAACGGTGCACAGGCAGGGAGCAGCTATTTGGGGAGGTGCTACAACCTTTAACCGTCTGATGCGATTTGCACATCCACAGGTAAAATTGATAGATTTCTCTCCTGGTGAAAAATTCTTGGTTACTTACAGCAGTCACGAGCCAAGTAATCCTCGAGACACACAGAGGGTTACCCTCAACATTTTTGACGTGAGGACTGGTAAAGTATTGAGAGAGTTTAAAGGAAGTGCTGATGATTTTGCAACTGGTGGAACTGGTGGTGTTGCTGGTGTGTCTTGGCCTGTATTCAGATGGGCTGGTGGCAGAGATGACAAATACTTTGCCCGTATTGGAAAAAATGCTATCAGTGTTTATGAAACTGAAACTATGACTCTCCTAGATAAGAAGTCCATCAAAGTTGAAAATGTAATGGATTTCAGTTGGTCTCCAACAGATCCAATACTAGCCTTGTTTGTGCCAGAGGGAGGTGGGGGTAACCAACCTGCAAAAGTGAGTCTTGTACAAATCCCTGGAAGGGAAGAACTGAGACAAAAAAATCTCTTCAGTGTAAGTGATTGCAAAATGTACTGGCAAAGCAATGGAGACTACTTGGCAGTCAAAGTGGATCGCTATACCAAGACAAAAAAAAGTACATACACAGGTTTTGAACTTTTCCGAATTAAGGAAAGAGATATTCCCATAGAGGTCCTGGAATTAGAGAACAAAAATGACAAGATCATTGCATTTGCTTGGGAGCCCAAAGGCCACAGGTTTGCTATTATCCATGGGGATGGACCCAGGCCAGATGTTAGTTTCTATTCAATGAGGAGCCCTAATCATGTGGGCCGGGTTTTCAAGCTGGCTACCATCAAAGGAAAACAAGCAAACTCCCTTTACTGGTCCCCCATTGGACGGTTTATTATTCTTGCAGGTCTAAAAGCTTTAAATGGTCAGCTTGAATTTTACAATGTCGATGAATTGGAGACAATGGCAACTGGTGAACACTTCATGGCAACTGATATTGAGTGGGATCCTACTGGAAGATATGCTGCAACAGCAGTTACATCTGTGCATGAAATGGAAAATGGGTTTAACATATGGTCTTTCAATGGAAAGCTATTGTACCACGTTTCAAGAGATCATTTCTACCAGCTATTATGGCGACCGAGGCCACCCTCTCTTCTAAGCCCAGAGAAAGAGGAGGAGATCGCTAAGAATTTGAGGAAGTATAGTAAGAAGTATGAGGCTGAAGACCAGGATGTTTCGTTATTGTTGAGTGAGCAAGACAGGGAGAAACGGAAGAAATTACAAGAGGATTGGCAGGTCTGGGTCAATGAATGGAAACGTTTTCACGAGGAAGAGAAATTATTTAGACAGGAGCTACGTGATGGAGAGGCTAGTGATGAAGAAGAGGAATATGAAGCAGAAGAAGTTGAAGTTGAAGAGATCGTAGACGTTACTGAAGAGATTGCTTCATTTGGTTTTGAGCAGTTGGACTGA___TTGATTATATAGTATGCAGCTGCTTGTGCCTCCATACAGCCCTATGTTTGTGCCATTATGCAGACAGATAGCTTAGCTAGAAGATTCAGTGGTTTTTAATTGTTTTCCTGACCAGATTCATAATAGATGAGATACTCTTTTGTTGAAATTTTGTAGAATGGGCATTGAAATAGTCACTTTCTCAAAGGAAAAATTGCAGTGTGAAAGGTTGATCTATTATTCATTGAATGATCTAATGTTTCTAGGGTACTTTCTTGCATGTCGGG

Fln Alignment:

sp_v1.1_unigene1844___METMEMP--VPAHRLGTDTQQLNIDFSNVDLDSIQLPPGEDFGIKXXXXXXXXXXXXXXTGFGNIVVVDNLPVVPPEKFEKLEGVVRKIFGQIGTIRERGLWMPLHPETQKTKGYCFIEYNTPQEAQTAKDQTNGYKLDKSHIFAVNMFDDFDKYMKVSNEWIPPETKAYTPVENLQQWLTDDKGRDQFVVRANTDTEVYWNDPRQLRPELVYRRGYWTESFVQWSSLGTYLATVHRQGAAIWGGATTFNRLMRFAHPQVKLIDFSPGEKFLVTYSSHEPSNPRDTQRVTLNIFDVRTGKVLREFKGSADDFXXXXXXXXXXXSWPVFRWAGGRDDKYFARIGKNAISVYETETMTLLDKKSIKVENVMDFSWSPTDPILALFVPEGGGGNQPAKVSLVQIPGREELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDGPRPDVSFYSMRSPNHVGRVFKLATIKGKQANSLYWSPIGRFIILAGLKALNGQLEFYNVDELETMATGEHFMATDIEWDPTGRYAATAVTSVHEMENGFNIWSFNGKLLYHVSRDHFYQXXXXXXXXXXXXXXXXXXIAKNLRKYSKKYEAEDQDVSLLLSEQDREKRKKLQEDWQVWVNEWKRFHEEEKLFRQELRDGEASDXXXXXXXXXXXXXXXXXXXXXIASFGFEQLD
A9NWV8______________METIEMPLPVPVHRLGNDIQQLNIDFSNVDLDSIQLPPGEDFGIKSEDEEEEEDSLEFETGFGNIVVVDNLPVVPPEKFEKLEGVVRKIFGQIGTIRERGLWMPIHPETQKTQGYCFIEYNTPQEAQTAKDQTNGYKLDKSHVFAVNMFDDFDKYMKVPNEWIPPETKAYTPGENLQQWLTDEKGRDQYVIRSNTDTEVYWNDPRQLKPELVYRRGYWTESFVQWSSLGTYLATVHRQGAAIWGGGTTFNRLMRFAHPQVKLIDFSPGENFLVTYSSHEPSNPRDTQRVTLNIFEVRTGKVLREFKGSADDFATGGTGGVAGVSWPVFRWAGGRDDKYFARIGKNAISVYETDTMTLLDKKSLKVDNVMDFSWSPTDPILALFVPEGGGGNQPAKVSLVQIPGREELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDGPRPDVSFYSMRSPNNVGRVSKLATIKGKQANSLYWSPIGRFIILAGLKALNGQLEFFNVDELETMATGEHFMATDIEWDPTGRYAATSVTVVHEMENGFNIWSFNGKLLYRIPRDHFYQLLWRPRPPSLLSPEKEEEISKNLRKYSKKYEAEDQDVSLLLSEQDREKRKRLQEDWQGWVNEWKRLHEEEKLFRQDLRDGEPSDEEEEYEAEEVEVEELIDVTEEIASFGFEQLD

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
201	33	66			1.0
252			20	80	0.995493
415			88	11	0.923564
454	88			11	0.923564
460	90		10		0.90298
711		88		11	0.923564
809			90	10	0.90298
849		85		14	0.993533
1390	16	83			0.994512
1391	80	20			0.995493
1700		11		88	0.923564
2341			16	83	0.994512
2342		14		85	0.993533
2343		14	85		0.993533
2344	71	14	14		0.984337
2345			14	85	0.993533
2346			14	85	0.993533
2348		28		71	1.0
2349	42	28	28		1.0
2351	71			28	1.0
2353			28	71	1.0
2354	71	28			1.0
2599	33	66			0.997452
2601		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain