SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1837

Length: 1702 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1837

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cellulose synthase-like A2 n=1 Tax=Pinus taeda RepID=A3QT95_PINTA	-	-	99%
FL-Next	tr=Cellulose synthase-like A2; Pinus taeda (Loblolly pine).	-	-	99%
Blast2go	protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	response to bacterium	GO:0009617	Biological Process	89%
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	89%
Blast2go	mannan synthase activity	GO:0051753	Molecular Function	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 2	IPR001173	-	0.0	89%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A3QT95

Fln msg: your sequence is shorter than subject: 437 - 534

Fln protein: MGVLVQIPMYNEREVYQLSIGAACALSWPSNRVIIQVLDDSTDITIKDLVEMECQKWASKGINIKYEIRGNRNGYKAGALKEGMKHSYVRECDYVVIFDADFQPDRGFLSRTIPFLVHNPELALVQARWKFVNADECLMTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGVWRIKALNEAGGWKDRTTVEDMDLAVRASLRGWKFVFVGDLGVKNELPSTFKAYRYQQHRWSCGPANLFRKMVREIIANKKVSAWKKFHVIYGFFFVRKIVAHIVTFVFYCVVIPTTVLVPEVQLPKWGAVYIPSTITLLNAVSTPRSLHLLVFWILFENVMSLHRTKATIIGLFEAGRVNEWVVTEKLGDALKHKTAKQMKRSQSRIGERIHVLEVLTGVYLFFCASYDLAFGNNHFYIYLFLQAGAFFIMGFGYIGTFVPTY*

Protein Length: 438

Fln nts: ATGGGGGTCTTAGTGCAGATACCAATGTACAATGAGAGGGAGGTTTATCAGCTCTCAATTGGAGCAGCATGTGCGTTGTCATGGCCTTCAAATCGGGTTATCATTCAAGTGCTCGATGATTCCACTGACATTACAATCAAGGATTTGGTGGAGATGGAATGTCAGAAATGGGCGAGTAAAGGTATAAATATCAAGTACGAAATCAGAGGTAACAGAAACGGGTACAAAGCTGGTGCCCTGAAAGAGGGAATGAAGCATAGCTACGTAAGGGAATGCGATTACGTTGTAATATTTGATGCAGATTTTCAGCCCGATCGAGGCTTTTTGAGCAGAACGATTCCATTCTTAGTGCACAATCCAGAATTGGCCTTAGTTCAAGCTCGTTGGAAGTTTGTTAACGCAGATGAATGTTTAATGACTAGAATGCAAGAAATGTCATTGGACTACCATTTCACTGTAGAGCAAGAAGTGGGATCTGCCACCCATGCATTCTTCGGCTTCAACGGAACAGCGGGAGTATGGCGAATAAAAGCCTTGAATGAGGCCGGTGGATGGAAAGACCGGACAACAGTGGAGGATATGGATTTGGCGGTTCGTGCAAGTTTGAGGGGCTGGAAATTTGTCTTCGTAGGGGACCTTGGGGTCAAGAATGAGCTGCCCAGTACATTCAAAGCCTACAGGTATCAGCAACACAGATGGTCATGCGGCCCTGCAAATCTATTTAGGAAGATGGTGAGGGAGATTATTGCAAATAAGAAAGTTTCCGCATGGAAAAAATTCCACGTAATCTACGGTTTCTTCTTCGTGCGAAAAATTGTAGCGCACATTGTCACCTTCGTTTTCTATTGTGTGGTGATACCTACAACTGTATTGGTTCCCGAAGTTCAATTGCCAAAATGGGGAGCTGTCTACATTCCTTCGACTATCACTTTATTAAATGCAGTGAGCACCCCTAGGTCGTTACATCTGCTGGTATTCTGGATTTTGTTTGAAAACGTGATGTCCCTGCACCGAACCAAGGCAACCATCATCGGATTATTTGAAGCAGGGCGTGTGAACGAGTGGGTTGTGACTGAGAAATTAGGAGATGCCTTGAAACACAAAACCGCTAAACAAATGAAGAGAAGTCAATCCAGAATAGGAGAAAGAATTCATGTTCTGGAGGTATTGACTGGCGTTTATCTCTTCTTCTGTGCATCCTATGACCTCGCATTCGGCAACAACCATTTCTATATCTATCTGTTTCTGCAAGCAGGGGCATTCTTTATAATGGGATTTGGGTACATTGGAACATTTGTACCTACCTACTAG___AATTTTAGCTAGTATCCGCATTTGCAGACAATGTAGAATTGCATTCCATTTCAATGATATTAATTTTTTGTTTTCTCGTCCTGGCTACTTGGCTGATGCATGCGGCCCTGTCAAAATATCGCCAAGGCGACCTGAGATGAATAATAGGACTGCAAATTCCTGATAACAAAATATTGTGAATATTTTAGACCATAGATGAGAAACAAATAGAATATCGTCCGGTCTTTTGCATTAGTCGATATTTTTTAATTAGGTCAGCTACAAATGCTTTGCTGTTGGCGGCTTAATTGTTATGGCAAACATTGAAGAGACACCGTAGCTGTGGAATTAAGCCTTGGCTGGTTAACTGAGTTATGTTTATGGACATATATAGACTCTAGTTTATGTGATG

Fln Alignment:

sp_v1.1_unigene1837___VLVQIPMYNEREVYQLSIGAACALSWPSNRVIIQVLDDSTDITIKDLVEMECQKWASKGINIKYEIRGNRNGYKAGALKEGMKHSYVRECDYVVIFDADFQPDRGFLSRTIPFLVHNPELALVQARWKFVNADECLMTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGVWRIKALNEAGGWKDRTTVEDMDLAVRASLRGWKFVFVGDLGVKNELPSTFKAYRYQQHRWSCGPANLFRKMVREIIANKKVSAWKKFHVIYGFFFVRKIVAHIVTFVFYCVVIPTTVLVPEVQLPKWGAVYIPSTITLLNAVSTPRSLHLLVFWILFENVMSLHRTKATIIGLFEAGRVNEWVVTEKLGDALKHKTAKQMKRSQSRIGERIHVLEVLTGVYLFFCASYDLAFGNNHFYIYLFLQAGAFFIMGFGYIGTFVPTY
A3QT95______________VLVQIPMYNEREVYQLSIGAACALSWPSNRVIIQVLDDSTDLTIKDLVEMECQKWASKGINIKYEIRGNRNGYKAGALKEGMKHSYVRECDYVVIFDADFQPDRDFLSRTIPFLVHNPELALVQARWKFVNADECLMTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGVWRIKALNEAGGWKDRTTVEDMDLAVRASLRGWKFVFVGDLGVKNELPSTFKAYRYQQHRWSCGPANLFRKMVREIIANKKVSAWKKFHVIYGFFFVRKIVAHIVTFVFYCVVIPTTVLVPEVQLPKWGAVYIPSTITLLNAVSTPRSLHLLVFWILFENVMSLHRTKATIIGLFEAGRVNEWVVTEKLGDALKHKTAKQMKRSQSRIGERIHVLEVLTGVYLFFCASYDLAFGKNHFYIYLFLQAGAFFIMGFGYIGTFVPTY

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
517	28		71		1.0
604	14			85	0.993533
607	85		14		0.993533
623		14		85	0.993533
805	10		90		0.90298
808		90	10		0.90298
838	12		87		0.992554
1197	88			11	0.923564
1251	88		11		0.923564
1253		88	11		0.923564
1427	66			33	1.0
1457	80			20	1.0
1465	77		22		1.0
1512	77		22		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain