SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1830

Length: 1582 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1830

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	syntaxin, putative; K08490 syntaxin 5	-	-	53%
FL-Next	sp=Syntaxin-31; Arabidopsis thaliana (Mouse-ear cress).	-	-	51%
Blast2go	syntaxin 32	-	-	68%

Source	InterPros	Term	Type	Identity
Blast2go	Target SNARE coiled-coil domain	IPR000727	-	68%
Blast2go	Syntaxin, N-terminal	IPR006011	-	68%
Blast2go	Syntaxin/epimorphin, conserved site	IPR006012	-	68%
Blast2go	t-SNARE	IPR010989	-	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FFK1

Fln msg:

Fln protein: MAFSGSLASYRDRTSEFQSLTERLRKIQTPGSSSDSNGLGNSAKISQSAALVPSDFNKRASRIGLGIHEASQKIARLAKMAKKTSMFDDPAKEIEELTAVIKQDITALNAAFSDLQALQNSQVGDSNFSKDSAIHFTTIVDDLNNRLKGITKELKDVLVTRSENLKAHENRKQLFSSNASRGNPFAQQRGTGVSSGAVTDTKPPPWTNGSNFSASLPTSRVPLIDHSNVSQLRRRVGGDGATSIQMEGYMQQQMIQRQDSHMQSRATALQNVESTISELGNIFTQLATMVAHQGELAIRIDDNMDDTLANVEGAQGALLKHLSHISSNRWLIIKILFVLIIFMLIFIVFVA*

Protein Length: 353

Fln nts: CCGCTTTAAATTATCCTTATTTTCATAATCAGCAGATGCTGATAAGGGAATTGCGCGAATTTTCAAGCCATACTCCATTCGAAGGTCCCATGCAGAGGTTATATGGAAGATAATTTGCCTAGCTAACTATAGTTCCGTTGGGGATCAGGACTGTAACAGGGGTTTCATTTACATAGTAC_-_ATGGCTTTTTCCGGATCTTTGGCATCCTATAGGGATCGGACATCCGAGTTCCAGTCATTGACAGAGAGATTGAGGAAGATTCAAACCCCTGGGAGTTCATCGGATAGCAATGGATTGGGAAATAGTGCGAAGATTTCTCAATCTGCAGCCCTTGTTCCATCGGATTTCAATAAGAGGGCTTCTAGAATCGGCCTTGGCATCCACGAGGCTTCTCAGAAGATTGCAAGACTTGCCAAGATGGCAAAGAAGACATCCATGTTTGATGACCCTGCCAAGGAAATAGAAGAACTTACTGCAGTTATTAAGCAAGATATCACAGCATTAAATGCTGCATTTTCAGACTTGCAAGCTCTTCAAAACTCTCAAGTAGGTGACAGTAACTTTTCCAAGGATAGTGCTATTCATTTCACAACAATTGTAGATGATTTGAACAACAGGCTCAAGGGCATTACAAAGGAATTGAAAGATGTTCTGGTTACAAGGTCTGAGAATCTTAAGGCTCACGAAAATAGGAAGCAGTTGTTCTCCTCAAATGCATCTAGAGGCAATCCTTTTGCTCAACAAAGAGGCACTGGTGTAAGTAGTGGTGCAGTAACAGATACAAAGCCACCTCCTTGGACAAATGGATCAAATTTTTCTGCCTCACTGCCTACATCAAGGGTTCCTTTGATCGATCATTCAAATGTTAGCCAACTGAGGCGTCGGGTTGGTGGAGATGGTGCTACATCTATCCAGATGGAAGGATACATGCAACAGCAGATGATTCAACGACAAGACAGTCATATGCAGTCTAGGGCAACTGCTCTCCAGAATGTTGAGTCAACAATCTCAGAACTTGGCAATATCTTTACACAGTTAGCCACAATGGTTGCTCACCAAGGGGAACTGGCTATCAGGATAGATGATAACATGGATGATACATTGGCTAATGTGGAAGGAGCACAGGGTGCTCTTTTAAAACACTTGAGTCATATTTCTTCAAATAGGTGGCTTATTATCAAGATTCTTTTTGTTCTTATAATTTTCATGCTAATATTTATTGTTTTTGTGGCGTAA___GGTCAAGAAATGAATAGAATGTTTTTTTAAAAGTTTTGAAATTGATTGGGTTTATCACCTTCTGTAATCTTCCAAGGGTAGAAATAGTTTTTGGTATAGAGGGATGGCTTTAGGCTAGTCTTTATTCTTCCAAATTATAATGTATTAACGTTGATTGCGGCCATTCTCTTGTATGAAGAACAATACTGAATTATTGGTCTTTGTTTGGCGTGGCCTAGTTAAACATTGGAGCCACATCTTGATTAACAATAACTTGTTCACCTAAAGGTTGCCCATGACCATGTGTTCTGACATTGGCATGTATTTCATCATTCATGATGTGTGTCCTCAATTGAACACCAAGAATC

Fln Alignment:

sp_v1.1_unigene1830___ASYRDRTSEFQSLTERLRKIQTPXXXXXXXXXXXXAKISQSAALVPSDFNKRASRIGLGIHEASQKIARLAKMAKKTSMFDDPAKEIEELTAVIKQDITALNAAFSDLQALQNSQVGDSNFSKDSAIHFTTIVDDLNNRLKGITKELKDVLVTRSENLKAHENRKQLFSSNASRGNPFAQQRGTGVSSGAVTDTKPPPWTNGSNFSASLPTSRVPLIDHSNV--SQLRRRVGGDGATSIQMEGYMQQQMIQRQDSHMQSRATALQNVESTISELGNIFTQLATMVAHQGELAIRIDDNMDDTLANVEGAQGALLKHLSHISSNRW
Q9FFK1______________STFRDRTVELHSLSQTLKKIGAIPSVHQDEDDPASSKRSSPG----SEFNKKASRIGLGIKETSQKITRLAKLAKQSTIFNDRTVEIQELTVLIRNDITGLNMALSDLQTLQNMELADGNYSQDQVGHYTAVCDDLKTRLMGATKQLQDVLTTRSENMKAHENRKQLFSTKNAVDSP--------PQNNAKSVPEPPPWSSSSNPFGNLQQPLLPPLNTGAPPGSQLRRRSAIENAPSQQMEMSLLQQTVPKQENYSQSRAVALHSVESRITELSGIFPQLATMVTQQGELAIRIDDNMDESLVNVEGARSALLQHLTRISSNRW

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
172		66		33	1.0
664			85	14	0.993533
666	14	85			0.993533
667		14		85	0.993533
668	14		85		0.993533
690	83		16		0.994512
790	88		11		0.923564
791		88		11	0.923564
792		88	11		0.923564
793	11			88	0.923564
803	88			11	0.923564
804	88		11		0.923564
806		11	88		0.923564
807	11		88		0.923564
808	88	11			0.923564
990	90			10	0.90298
992	90		10		0.90298
993	90	10			0.90298
998		10	90		0.90298
1000		10	90		0.90298
1527			90	10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain