SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1820

Length: 1211 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1820

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9SED3_RICCO	-	-	51%
FL-Next	sp=Tryptophan aminotransferase-related protein 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	43%
Blast2go	alliin lyase	-	-	66%

Source	InterPros	Term	Type	Identity
Blast2go	Allinase, C-terminal	IPR006948	-	66%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	66%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	66%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q93Z38

Fln msg: your sequence is shorter than subject: 260 - 463

Fln protein: RAWVKRSKSLNSTRFVEIVASPNNPSGSLQEGVLEGQNVRTVYDHAYYWPHFTAINEPVNEDVMLFTLSKLTGHAGSRLGWAIVKDFNVYQKMTEYVIGNTLGVSHDSQLRATKLLKTVTAGYQGKLKEGKADESRNQTLLFHYAYDVMRGRWQRLEKIFSGSQRFSLQYLTSNYCSFFRTVTGPSPAYAWVKCEREEDEDCTAVMKSGGIVGRRGEEFEGEKRYVRLSLIRRDDNFALLERRLQALLSYRNFTVSSTT*

Protein Length: 261

Fln nts: TAGGGCATGGGTAAAACGCTCCAAATCTCTGAACTCGACCAGATTTGTAGAGATTGTAGCGTCTCCAAACAATCCCAGCGGTTCTCTTCAAGAAGGCGTATTAGAGGGACAAAACGTGAGGACTGTTTATGATCATGCCTACTATTGGCCTCACTTCACTGCCATTAATGAACCAGTTAACGAGGACGTGATGCTCTTCACCCTGTCAAAGCTCACTGGACACGCAGGCAGCAGGCTAGGATGGGCTATTGTGAAAGACTTTAATGTGTATCAGAAGATGACTGAATATGTTATTGGGAACACCTTAGGGGTTTCACATGACAGCCAGCTAAGGGCGACTAAGTTACTGAAAACAGTAACTGCTGGTTATCAAGGCAAATTGAAAGAGGGCAAGGCAGATGAATCGAGGAATCAGACGCTTCTTTTCCACTACGCTTACGATGTTATGCGAGGCCGATGGCAAAGATTGGAAAAGATCTTCAGCGGCTCCCAACGTTTCTCGCTTCAGTATTTGACTTCCAACTATTGCAGCTTTTTCCGGACTGTCACGGGGCCTTCGCCAGCGTACGCGTGGGTGAAATGCGAGAGAGAAGAAGACGAGGACTGCACAGCAGTGATGAAGAGTGGAGGGATTGTGGGGCGAAGAGGCGAAGAGTTTGAGGGAGAGAAACGGTATGTCCGATTGAGCTTAATCAGACGAGACGACAACTTCGCATTGTTAGAACGTCGCCTACAGGCGCTTCTTTCATATCGTAATTTTACTGTCAGCTCCACCACTTGA___GCCGAGCCGAGCGAGAATTATGTGTTGCCCTTGGTTTGTTTAGGGTGTTGGTGGAGCTATAATCTTCAATGGAGATAGAGTGCCACCAGTGACCGCTGCTTCTTTTAACTCTGTCCTTGTGAAAGGAAATTATAAAAAAACTCTAGATGTAATAAAATTCTGAATAGTGTGCAACTTTTTTTATTGATTCGCTGAACTTTCAAGCGGGCCACTAATAGTGGGTGTACCAAGCAAGACAATGCAACTGAAATAGTGGTCCTCCCTACACTAAATGGGCCCGTGATGGGTGTAGCAGGGCAGATTAAAAAATGAAATGGTTGATCCTAAGTACATTATTTTTTGTGGTTTGCGTGCCATCCCATGCTGGATATACAGAAAGGAAAGTGGAATAAATACTGATGTAATTGCTGGGATGTATATATATATATAT

Fln Alignment:

sp_v1.1_unigene1820___AWVKRSKSLNSTRFVEIVASPNNPSGSLQEGVLEGQNVRTVYDHAYYWPHFTAINEPVNEDVMLFTLSKLTGHAGSRLGWAIVKDFNVYQKMTEYVIGNTLGVSHDSQLRATKLLKTVTAGYQGKLKEGKADESRNQTLLFHYAYDVMRGRWQRLEKIFSGSQRFSLQYLTSNYCSFFRTVTGPSPAYAWVKCEREEDEDCTAVMKSXXXXXXXXXXXXXXXXYVRLSLIRRDDNFALLERRLQALLSYRNFTVSSTT*AEPSENYV
Q93Z38______________AWKQSGRNDNITQVIEVVTSPNNPDGKLKRAVLDGPNVKTLHDYAYYWPHFSPITHPVDEDLSLFSLSKTTGHAGSRFGWGLVKDKAIYEKMDRFIRLTSMGVSKETQLHVLQLLKVVVG------------DGGNE--IFSFGYGTVKKRWETLNKIFSMSTRFSLQTIKPEYCNYFKKVREFTPSYAWVKCERPEDTNCYEIFRAAKITGRNGNVFGSEERFVRLSLIRSQDDFDQLIAMLKKLVYHEEDV--------PSENFM

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
841	75		25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1197	1211	TA TA TA TA TA TA TA T	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain