SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1814

Length: 2483 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1814
ATGGGATTCCTCGAAATTTTGGACTTTGATGGGAATTTTAGTGGAGGCTAGGGTTCGTCAATTTAAGAGAGCTCAGAGGGAAAGGATCTGACTCCTATCTGTGCTCGGAAAACATTGTTAAGTTTCTGTAGTGCTACCGTGTAGTGCTACCGACTGCCTTCAGGCTCTTCAGGATAATCACTTGTCAAAGAATTATCCGCTCGTATCGGTGTTCTTTTTCTTTCCTTTGAGTGTTGTGGATAGGCTTTGGAGTTCGTGGAATATTGGGGGCAAAGTTAAGATTTGGAGGTTGTGTGTTTGCTTTGAAGATCTTGTGGTATTTGCTAACTCTTATAACTGTCTGCATCATCTTTGTTAAAAAGACGTTTGGTTTCCTGACCTCATTTTTTTGCTTCTCTGCTGCTGCAAGCTGATAGGAATTGAATTCAGTAAGAGCTCAAGTGATTTGAGGGTTTACTACGTCCCCGCAGGCACACACTTACTTCTTTTGTTTTTGTTATATAGAAATCGTGTTTTCTTACTTCATCTGCATCTATCCCTATTTTTGTCATAGTGAACGGTAGCAAGAAAGTCATCATGGACTCTTATTTTCAAGCTCCCGCAAAATTTCTTTCTTCTTCTGTAGAGCGTTCAGTTCCTTTTGATTCTAGTACTAACGGACCAGCGAATCACGGAGATCATTCCATTTTTAGTAATATACAACATGAAGGATGCCTGAATTCTGAAAATCAGAAGAGTAATGGAAATAGCAGTGCTGCAGGCGAAGAGGAAATAGTTGGGGAGGGACAGCCACAAGTCTTTGAGGGCATTCTAGATATTTATGTCCATCATGCCAGAGACATTCACAATATATGCATCTATGACAAGCAGGACGTCTATGCTAAGCTGTCTCTTACCTGCAATCCCGAGGGGGCATTGTCGACTCGCATATCGAACGGAGGCGGAAGGAATCCAGTGTTTAACGAGAGCCTGCAGATGAAAATCAACAATCAAGTCGATGCCTCACTGAAATGTGAGTTATGGATGCTAAGCCGTGCAAGGAACTACATGGAAGACCAGTTGTTGGGGTTCGTTGTAGTACCTCTGTCTACTGTGGCGGGTAAGGGAAAATCAACCCAGGATTTTATAATATCTTCAACTGACCTTTTTCATTCTCCTGCGGGCATAGTTCAATTAACACTTGCATACCACGGATCAGCACCACCAGCATGTCAAAGTAAGTCAATCGCTGAAGCAAATTTGGCCATATCTTCTGCCCCTGTAAGTTCAGATGTTGTTTCGCTGGACGGGGCGGTGGAGAATCCCGAACCTACCAATTACAACGACATTGAATTTCCAGACTTGCAAGTTGCCAGCGAAAATAATCTCATGGTTTCTGAATATTTCAAAATGGCCTCCAATGATCTGAAGCCGGAGAACGGTTTAAAGAGGGATTTAATTATAGCCGACCCAAATGAAAGTGAATTCTCGGGGACATCATTTTTACATCTGGGTCCATCTCCCGCTACAGAAGATGAAGATGACTATGACATGGCACCAAATGTGACAGTCGCGAATTGTCCAATTCCTTCAACAACCATTGCTCATGATGATAATGTGTCTGATTACCAAGCTGAGCCAGATGCAGAGATCCCATCGACTATTATAATCTCAGGTACAACGAGCTCAAGTACTCAAGGCCAGGGTCTGCGTGATTTTGTTGCTCAAAAAAGTGGCTCTAGTGAGGATTCGTCTAGGTTTCAAAAAATTAGTAGCCCTTCTGAGACCACTTCCTTAAATGATAATGTTTCTTCTAAGAATCAGGAAAAGTCTTCTTCAGTGGATTCAGACAAAGGAGGAGCAGCCTCTACTAGTGAAGCCAAGACCTCAGAAGGGGAGACAGGGATTTCTTTCACAACTCCTCTTGTGAGTGTGAATCTTGAGCCAGAGCAAACTGTGGTGCAGGAACAGATAGTTGACATGTATATGAAGAGCATGCAGCAGTTCACGGAGTCATTAGCAAAGATGAAGCTTCCCATGGACATTGAGAACCAGCAGTCTGATGATTCTGTCAAGTCTGGAACGGATCCGAAAACTCCACAATCTGGAAGAAATGCAGGCTCTAGGGTTTTTTATGGCAGTCGAGCATTTTTCTGAAGATCGATATTCTAAGATAATGCATCTCAAGAGCGAAAGGGTAATTGAAGATATCTATAGGTAGCAATATATAAAGCTTTAGATTTATCTTGTTAATTTGATGACAGGTACAAGTGAGCTAGTTCTTTGTATTACCTGTCACTATACAGTAAGTTTGTCTAATTTTACGGTAAAACTGATATTTTCTACTAATAGTATGTACCAGCATCACTGTCAAGGGTGCAAGGAGTGAGTTTTCTCATGCACATTTGAGCTTCATTTTTGTTTCATTGGAATTTTTATTTATAAGGCTACCCGTTCGCTTTTCTGTTCAAAATCGCATATTCCAATCCTTATATTCCTAATAC

Ace file of the UniGene sp_v1.1_unigene1814

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	C2 domain-containing protein-like [Oryza sativa Japonica Group] gb\|EAY77263.1\| hypothetical protein OsI_05237 [Oryza sativa Indica Group]	-	-	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	c2 domain-containing protein	-	-	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	C2 calcium-dependent membrane targeting	IPR000008	-	0.0	59%
Blast2go	C2 calcium/lipid-binding domain, CaLB	IPR008973	-	0.0	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMY1

Fln msg:

Fln protein: MDSYFQAPAKFLSSSVERSVPFDSSTNGPANHGDHSIFSNIQHEGCLNSENQKSNGNSSAAGEEEIVGEGQPQVFEGILDIYVHHARDIHNICIYDKQDVYAKLSLTCNPEGALSTRISNGGGRNPVFNESLQMKINNQVDASLKCELWMLSRARNYMEDQLLGFVVVPLSTVAGKGKSTQDFIISSTDLFHSPAGIVQLTLAYHGSAPPACQSKSIAEANLAISSAPVSSDVVSLDGAVENPEPTNYNDIEFPDLQVASENNLMVSEYFKMASNDLKPENGLKRDLIIADPNESEFSGTSFLHLGPSPATEDEDDYDMAPNVTVANCPIPSTTIAHDDNVSDYQAEPDAEIPSTIIISGTTSSSTQGQGLRDFVAQKSGSSEDSSRFQKISSPSETTSLNDNVSSKNQEKSSSVDSDKGGAASTSEAKTSEGETGISFTTPLVSVNLEPEQTVVQEQIVDMYMKSMQQFTESLAKMKLPMDIENQQSDDSVKSGTDPKTPQSGRNAGSRVFYGSRAFF*

Protein Length: 521

Fln nts: ATGGGATTCCTCGAAATTTTGGACTTTGATGGGAATTTTAGTGGAGGCTAGGGTTCGTCAATTTAAGAGAGCTCAGAGGGAAAGGATCTGACTCCTATCTGTGCTCGGAAAACATTGTTAAGTTTCTGTAGTGCTACCGTGTAGTGCTACCGACTGCCTTCAGGCTCTTCAGGATAATCACTTGTCAAAGAATTATCCGCTCGTATCGGTGTTCTTTTTCTTTCCTTTGAGTGTTGTGGATAGGCTTTGGAGTTCGTGGAATATTGGGGGCAAAGTTAAGATTTGGAGGTTGTGTGTTTGCTTTGAAGATCTTGTGGTATTTGCTAACTCTTATAACTGTCTGCATCATCTTTGTTAAAAAGACGTTTGGTTTCCTGACCTCATTTTTTTGCTTCTCTGCTGCTGCAAGCTGATAGGAATTGAATTCAGTAAGAGCTCAAGTGATTTGAGGGTTTACTACGTCCCCGCAGGCACACACTTACTTCTTTTGTTTTTGTTATATAGAAATCGTGTTTTCTTACTTCATCTGCATCTATCCCTATTTTTGTCATAGTGAACGGTAGCAAGAAAGTCATC_-_ATGGACTCTTATTTTCAAGCTCCCGCAAAATTTCTTTCTTCTTCTGTAGAGCGTTCAGTTCCTTTTGATTCTAGTACTAACGGACCAGCGAATCACGGAGATCATTCCATTTTTAGTAATATACAACATGAAGGATGCCTGAATTCTGAAAATCAGAAGAGTAATGGAAATAGCAGTGCTGCAGGCGAAGAGGAAATAGTTGGGGAGGGACAGCCACAAGTCTTTGAGGGCATTCTAGATATTTATGTCCATCATGCCAGAGACATTCACAATATATGCATCTATGACAAGCAGGACGTCTATGCTAAGCTGTCTCTTACCTGCAATCCCGAGGGGGCATTGTCGACTCGCATATCGAACGGAGGCGGAAGGAATCCAGTGTTTAACGAGAGCCTGCAGATGAAAATCAACAATCAAGTCGATGCCTCACTGAAATGTGAGTTATGGATGCTAAGCCGTGCAAGGAACTACATGGAAGACCAGTTGTTGGGGTTCGTTGTAGTACCTCTGTCTACTGTGGCGGGTAAGGGAAAATCAACCCAGGATTTTATAATATCTTCAACTGACCTTTTTCATTCTCCTGCGGGCATAGTTCAATTAACACTTGCATACCACGGATCAGCACCACCAGCATGTCAAAGTAAGTCAATCGCTGAAGCAAATTTGGCCATATCTTCTGCCCCTGTAAGTTCAGATGTTGTTTCGCTGGACGGGGCGGTGGAGAATCCCGAACCTACCAATTACAACGACATTGAATTTCCAGACTTGCAAGTTGCCAGCGAAAATAATCTCATGGTTTCTGAATATTTCAAAATGGCCTCCAATGATCTGAAGCCGGAGAACGGTTTAAAGAGGGATTTAATTATAGCCGACCCAAATGAAAGTGAATTCTCGGGGACATCATTTTTACATCTGGGTCCATCTCCCGCTACAGAAGATGAAGATGACTATGACATGGCACCAAATGTGACAGTCGCGAATTGTCCAATTCCTTCAACAACCATTGCTCATGATGATAATGTGTCTGATTACCAAGCTGAGCCAGATGCAGAGATCCCATCGACTATTATAATCTCAGGTACAACGAGCTCAAGTACTCAAGGCCAGGGTCTGCGTGATTTTGTTGCTCAAAAAAGTGGCTCTAGTGAGGATTCGTCTAGGTTTCAAAAAATTAGTAGCCCTTCTGAGACCACTTCCTTAAATGATAATGTTTCTTCTAAGAATCAGGAAAAGTCTTCTTCAGTGGATTCAGACAAAGGAGGAGCAGCCTCTACTAGTGAAGCCAAGACCTCAGAAGGGGAGACAGGGATTTCTTTCACAACTCCTCTTGTGAGTGTGAATCTTGAGCCAGAGCAAACTGTGGTGCAGGAACAGATAGTTGACATGTATATGAAGAGCATGCAGCAGTTCACGGAGTCATTAGCAAAGATGAAGCTTCCCATGGACATTGAGAACCAGCAGTCTGATGATTCTGTCAAGTCTGGAACGGATCCGAAAACTCCACAATCTGGAAGAAATGCAGGCTCTAGGGTTTTTTATGGCAGTCGAGCATTTTTCTGA___AGATCGATATTCTAAGATAATGCATCTCAAGAGCGAAAGGGTAATTGAAGATATCTATAGGTAGCAATATATAAAGCTTTAGATTTATCTTGTTAATTTGATGACAGGTACAAGTGAGCTAGTTCTTTGTATTACCTGTCACTATACAGTAAGTTTGTCTAATTTTACGGTAAAACTGATATTTTCTACTAATAGTATGTACCAGCATCACTGTCAAGGGTGCAAGGAGTGAGTTTTCTCATGCACATTTGAGCTTCATTTTTGTTTCATTGGAATTTTTATTTATAAGGCTACCCGTTCGCTTTTCTGTTCAAAATCGCATATTCCAATCCTTATATTCCTAATAC

Fln Alignment:

sp_v1.1_unigene1814___MDSYFQAPAKFLSSSVERSVPFDSSTNGPANHGDHSIFSNIQHEGCLNSENQKSNGNSSAAGEEEIVGEGQPQVFEGILDIYVHHARDIHNICIYDKQDVYAKLSLTCNPEGALSTRISNGGGRNPVFNESLQMKINNQVDASLKCELWMLSRARNYMEDQLLGFVVVPLSTVAGKGKSTQDFIISSTDLFHSPAGIVQLTLAYHGSAPPACQSKSIAEANLAISSAPVSSDVVSLDGAVENPEPTNYNDIEFPDLQVASENNLMVSEYFKMASNDLKPENGLKRDLIIADPNESEFSGTSFLHLGPSPATEDEDDYDMAPNVTVANCPIPSTTIAHDDNVSDYQAEPDAEIPXXXXXXXXXXXXXXXXXLRDFVAQKSGSSEDSSRFQKISSPSETTSLNDNVSSKNQEKSSSVDSDKGGAASTSEAKTSEGETGISFTTPLVSVNLEPEQTVVQEQIVDMYMKSMQQFTESLAKMKLPMDIENQQSDDSVKSGTDPKTPQSGRNAGSRVFYGSRAFF
B8LMY1______________MDSYLQASAKFLSSSVEHPVTFDSSSNGPANHSDDSIYSSIQHERCLNSENHRGNGIRSAADEEEIMGEGQPQVFEGILEIYVHHARDIHNICIYDKQDVYAKLSLTCNPEGALPTRISNGGGRNPVFNESLQLKIDNQVDAALKCELWMLSRARNYMEDQLLGFVVVPLSTVAGKGKLTQDFVISSTDLFHSPAGIVQLTLEYHGSAPPECQSKSIAEAKLALSSSPVSSDVVSLDQAVENTEPTNYNDIEFPDLQVASENNLMVSEYFKMASNDLKPENGLKRDLMIADPNENEFSGTSFLHLGQSPATEDEDDYDMAPNVTVANGSIPSTTIAHDNNVADYKTEPDADSSSTIIISGTTSSNTQGQGLRDFVAQKSGSSEESSRFQKNSSPSDSTSFNDNVSSKNQEKSSSVDSDKEGAASSSEAKTLDGEKGIAFTTPLVSVNLEPEQTVVQEQIVDMYMKSMQQFTESLAKMKLPMDIENQQSDDSTKSGTDQKNAQSGRNAGSRVFYGSRAFF

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
87	25	25	25		0.997389
89		50	50		1.0
90			25	75	0.996473
91		25	75		0.996473
92	83		16		0.994512
93		66		33	1.0
94			33	66	1.0
95		66	33		1.0
96		66	33		1.0
97			33	66	1.0
629	10		90		0.90298
1276			14	85	1.0
1723			90	10	0.90298
1724			10	90	0.90298
1726	90		10		0.90298
2395		90		10	0.90298
2397		16		83	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain