SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1812

Length: 2071 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1812
TCATGGCATTAGTGGAGTAATCACTGGTAAGCATGAAGATATCTTTGTGTGGACCTCCTAAGGTACGGTAAGAATATGGGTTGCCTAATAAGCATGGAATTGCATATGAGGCTTGAGCCATGAGCTTTGCTAAGCTCAAAATCAAAATCAAAATTTCCTCTAAATGGCAACAAATTCTGTTTCTTAGTAGTGTGTGTCCTAAGTCCTCAGGGGAGCAAGGGCAGCAAACGAACTTCTTTCTAAAGAACTGACAAAAGGTTTGACGCATCAGTGCTTCTAGAGGGGATGTCCAAACATTCCAGTCAGCTTTGTCATGTTCAAGAGTTTCCCGGCAGAGGTATAGGGAAGTCCATTTTGTGTTAGGCGCATGCTATATCCTATTAGCTGATTCTGTATCCGTTGGATAGAAGATCCATGTGTCTTATTCGCTTCAATGCGTTTCATACATCTTTCGAATGCGAGAGTGGAAGGCTTCGTTATGAGGGCTTGGTGTGCATTACGCGTATTTAATTCTTTTTCCAATTCGAGTACATAACAAAGGAAGTCCACATGCCTAAGTGGATAGCCACAAGGTTAGAAAAAATCGTTCATGACTTTATAAAGTTAAGTGGATTTGGCTTCATTGGGTTTTTAATTCTGAGAACGTTAGCGTTGATTCTTGAATTGAAAAGATGCCAGGTCTGATGTCAGGTTCAATCACGGTGATCCATATTAGGTAATGCTTGTTAAGGGACATAAGTTTATATTCTGTATTTGATATGAAATACTTCAAAATAATCCTTTTAATATTAATAAGGTGTTCTGTCCAGATGTCATGGATTTTGAACAGATACAAGGTTCACCTCTTTCTATGCCCAACCTTTACTATAAGTGAAGTCTTGTACAGACATGATTAGGGTCTGTTCCTTGGTCTTTTACATACATGCCAGATTTGCCATTAGACTTGTGTATCTGATTCTGTTTTATAGCTAGTTTACATAGTTTGGAAATTTGTTGAATAGGGAAATAAATCGGGCCATCAAACCTGGGCGATATATGTTCAAAACCGAGAATATTTCTGCATACAGAAGGATATAAATTAAATATTGGCACCATCAGCAGATGAACCAACATAATGAAATGATTTATGCTTTCATTGGAATGTGTATTGTTAAGAGACTAGCTGGAGTGAGTGTACACTTGTGGTAGCAAGGTTTAGGGAGTTCAGCAGGCTTTCTGTTTCCAATTTGAGATCAAATTATAATCTGACTGATATACCAAGCCACTGTTGACATGTCATATGAGTCTCTTGTTCAGCTGGAAAATGTAAAATGTGTGGCTCCTGCCACAATAGTGAACTCTATGCCAATATTAGCTTTTGATGGAAATAAGTCTGAACAGGGATCGACAGATGAAATGGAGAAATGTGCAATATGCCAGTTTGAATATGAATTTGGTGACCAGATCATCTCCTTACCGTGCACCCACAGTTTCCATAACCACTGTGGGGCAGAGTGGTTGCTAAATCACTCTAAGCTGTGCCCCATATGTAAGCACGACGTTATGGACCAGAAACCTGTGGATACTGAATTTGGTCCCTGAGCTTCTGCAACTAAAAATGGCAGAGAAAAGAAACACTGTACAGTTCCCTCTTTGTATAGAATTCAGTGGCTGATTTGTAAATATTACTGCAGTGGTCTTTCTTCGTTAAAAACAAATTTATGGCCACAACTTTGTAAATAGATGTAAAATATTTAAGGAGAAATATTGTTGTAAAGTGTAGAACTGCCATCGTATTTATTCAGAATCAGCAAATCTATTCTCATCAGAATATGCCTCCTTCCTGCCAAACAGCAACTTAAAAATCTCAATATTTAAGAATCGAGCATTGCCAGAAGATGCCTTATTTCTGCGTTTTTTGGGCAGATTTGAAGTGCATGGTTTGTTGAACATGTTGTATGCTCAATGCCCCACCTATCTTTTTGGGCAATAAGTTGTATGCTCAAGGCCCAACCTATCTTTTTGGGCAATAATACATATGAGTCTCACAAGATGAATATGAAGGGAAATTCCATGGAGGAGTTGTTTTGAA

Ace file of the UniGene sp_v1.1_unigene1812

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger family-like protein (Fragment) n=4 Tax=Picea sitchensis RepID=E0ZH37_PICSI	-	-	2.0e-28	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	zinc finger family-like protein	-	-	0.0	70%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	70%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	70%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	70%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQH3

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 103 - 247

Fln protein: MSYESLVQLENVKCVAPATIVNSMPILAFDGNKSEQGSTDEMEKCAICQFEYEFGDQIISLPCTHSFHNHCGAEWLLNHSKLCPICKHDVMDQKPVDTEFGP*

Protein Length: 104

Fln nts: TCATGGCATTAGTGGAGTAATCACTGGTAAGCATGAAGATATCTTTGTGTGGACCTCCTAAGGTACGGTAAGAATATGGGTTGCCTAATAAGCATGGAATTGCATATGAGGCTTGAGCCATGAGCTTTGCTAAGCTCAAAATCAAAATCAAAATTTCCTCTAAATGGCAACAAATTCTGTTTCTTAGTAGTGTGTGTCCTAAGTCCTCAGGGGAGCAAGGGCAGCAAACGAACTTCTTTCTAAAGAACTGACAAAAGGTTTGACGCATCAGTGCTTCTAGAGGGGATGTCCAAACATTCCAGTCAGCTTTGTCATGTTCAAGAGTTTCCCGGCAGAGGTATAGGGAAGTCCATTTTGTGTTAGGCGCATGCTATATCCTATTAGCTGATTCTGTATCCGTTGGATAGAAGATCCATGTGTCTTATTCGCTTCAATGCGTTTCATACATCTTTCGAATGCGAGAGTGGAAGGCTTCGTTATGAGGGCTTGGTGTGCATTACGCGTATTTAATTCTTTTTCCAATTCGAGTACATAACAAAGGAAGTCCACATGCCTAAGTGGATAGCCACAAGGTTAGAAAAAATCGTTCATGACTTTATAAAGTTAAGTGGATTTGGCTTCATTGGGTTTTTAATTCTGAGAACGTTAGCGTTGATTCTTGAATTGAAAAGATGCCAGGTCTGATGTCAGGTTCAATCACGGTGATCCATATTAGGTAATGCTTGTTAAGGGACATAAGTTTATATTCTGTATTTGATATGAAATACTTCAAAATAATCCTTTTAATATTAATAAGGTGTTCTGTCCAGATGTCATGGATTTTGAACAGATACAAGGTTCACCTCTTTCTATGCCCAACCTTTACTATAAGTGAAGTCTTGTACAGACATGATTAGGGTCTGTTCCTTGGTCTTTTACATACATGCCAGATTTGCCATTAGACTTGTGTATCTGATTCTGTTTTATAGCTAGTTTACATAGTTTGGAAATTTGTTGAATAGGGAAATAAATCGGGCCATCAAACCTGGGCGATATATGTTCAAAACCGAGAATATTTCTGCATACAGAAGGATATAAATTAAATATTGGCACCATCAGCAGATGAACCAACATAATGAAATGATTTATGCTTTCATTGGAATGTGTATTGTTAAGAGACTAGCTGGAGTGAGTGTACACTTGTGGTAGCAAGGTTTAGGGAGTTCAGCAGGCTTTCTGTTTCCAATTTGAGATCAAATTATAATCTGACTGATATACCAAGCCACTGTTGAC_-_ATGTCATATGAGTCTCTTGTTCAGCTGGAAAATGTAAAATGTGTGGCTCCTGCCACAATAGTGAACTCTATGCCAATATTAGCTTTTGATGGAAATAAGTCTGAACAGGGATCGACAGATGAAATGGAGAAATGTGCAATATGCCAGTTTGAATATGAATTTGGTGACCAGATCATCTCCTTACCGTGCACCCACAGTTTCCATAACCACTGTGGGGCAGAGTGGTTGCTAAATCACTCTAAGCTGTGCCCCATATGTAAGCACGACGTTATGGACCAGAAACCTGTGGATACTGAATTTGGTCCCTGAGCTTCTGCAACTAAAAATGGCAGAGAAAAGAAACACTGTACAGTTCCCTCTTTGTATAGAATTCAGTGGCTGATTTGTAAATATTACTGCAGTGGTCTTTCTTCGTTAAAAACAAATTTATGGCCACAACTTTGTAAATAGATGTAAAATATTTAAGGAGAAATATTGTTGTAAAGTGTAGAACTGCCATCGTATTTATTCAGAATCAGCAAATCTATTCTCATCAGAATATGCCTCCTTCCTGCCAAACAGCAACTTAAAAATCTCAATATTTAAGAATCGAGCATTGCCAGAAGATGCCTTATTTCTGCGTTTTTTGGGCAGATTTGAAGTGCATGGTTTGTTGAACATGTTGTATGCTCAATGCCCCACCTATCTTTTTGGGCAATAAGTTGTATGCTCAAGGCCCAACCTATCTTTTTGGGCAATAATACATATGAGTCTCACAAGATGAATATGAAGGGAAATTCCATGGAGGAGTTGTTTTGAA

Fln Alignment:

sp_v1.1_unigene1812___QATVDMSYESLVQLENVKCVAPATIVNSMPILAFDGNKSEQGSTDEMEKCAICQFEYEFGDQIISLPCTHSFHNHCGAEWLLNHSKLCPICKHDVMDQKPVDT
B8LQH3______________QGTVNMSYESLVQLENVKCVAPANIVNSMPILTFDGNKSEQGSADEIEKCTICQCEYEFGDQIISLPCAHGFHNPCGAEWLLNHSKLCPICKHNVMDQKFVDT

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
762			85	14	0.993533
821	14			85	0.993533
1241	25			75	0.996473
1271		33		66	0.997452
1273	33		66		0.997452
1274		33	66		0.997452
1279		40		60	1.0
1281	40			60	1.0
1285		40	60		1.0
1322		83		16	0.994512
1493		83		16	0.999991
2000			44	55	1.0
2046	20		80		0.995493
2049	75		25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
136	154	TCAAAA TCAAAA TCAAAA T	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain