SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1802

Length: 865 nt

Origin of reads: Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene1802 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glucosyltransferase, putative (EC:2.4.1.115)	-	-	6.0e-40	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	protein	-	-	0.0	57%

Source	InterPros	Term	Type	e value	Identity
Blast2go	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRA8

Fln msg: Distance to subject end: 160 aas, your sequence is shorter than subject: 287 - 514

Fln protein: GIDSWDNVPLHLLNILMPSSHKLAGSFEQWLEQQIDDTNKVSKNMEAPHSSPPPVCIICDMFMGWVHSSGAKFRIPTLVFHTSGAFGVSVIHSLLKYAPQKSVERDDELFEVPALCFDLKLRKSDLPVAMRDLGSNPSWDFIRDEINQSMESRAGILINTFYELESVGIDHMKRLTGRPVWSIGPLLPPAAFHGMRIDRGNMNSRGKTADIDEQQCLRWLDSQRPQSVVFVCFGSLIFPNNDQIRALAAGLEASGQAFVWAIRRSEPEPNSKAAEVCLPEGFEDRTR

Protein Length: 288

Fln nts: AGGGAATCGACAGCTGGGACAACGTTCCCTTGCATCTCCTCAACATACTCATGCCTTCGTCGCACAAGCTGGCGGGGTCGTTCGAACAATGGCTGGAACAACAGATCGATGATACGAATAAAGTAAGTAAGAATATGGAAGCTCCCCATTCCTCTCCTCCTCCTGTTTGCATCATCTGTGACATGTTTATGGGATGGGTACACAGCTCGGGTGCCAAGTTCAGGATTCCCACCCTCGTCTTCCACACGTCCGGGGCGTTCGGTGTGTCTGTCATACACTCCTTATTGAAATACGCGCCACAAAAGAGCGTGGAGCGAGATGACGAGCTCTTTGAGGTCCCCGCTCTGTGCTTCGACCTCAAGCTGCGCAAGTCCGACCTTCCCGTGGCGATGCGAGATCTGGGTTCGAATCCCTCCTGGGACTTCATTAGGGACGAGATTAACCAGAGCATGGAGTCCCGGGCAGGCATACTTATTAATACGTTTTATGAGCTCGAATCCGTGGGGATCGATCACATGAAGAGACTTACGGGGAGGCCCGTGTGGAGCATTGGTCCCCTGCTCCCTCCCGCCGCCTTCCACGGTATGCGGATCGATCGCGGAAATATGAATAGCCGAGGCAAGACGGCGGACATCGACGAGCAACAGTGCTTGCGGTGGCTTGATTCTCAGCGCCCGCAGTCCGTGGTGTTCGTTTGTTTTGGTAGCCTAATTTTTCCCAATAACGACCAAATCCGTGCGCTGGCTGCAGGCTTGGAGGCCAGCGGGCAGGCTTTTGTCTGGGCTATCAGACGATCTGAGCCCGAGCCCAATTCCAAAGCAGCCGAAGTGTGTTTGCCGGAAGGATTCGAAGACAGAACACGGCA

Fln Alignment:

sp_v1.1_unigene1802___GIDSWDNVPLHLLNILMPSSHKLAGSFEQWLEQQIDDTNKVSKNMEAPHSSPPPVCIICDMFMGWVHSSGAKFRIPTLVFHTSGAFGVSVIHSLLKYAPQKSVERDDELFEVPALCFDLKLRKSDLPVAMRDLGSNPSWDFIRDEINQSMESRAGILINTFYELESVGIDHMKRLTGRPVWSIGPLLPPAAFHGMRIDRGNMNSRGKTADIDEQQCLRWLDSQRPQSVVFVCFGSLIFPNNDQIRALAAGLEASGQAFVWAIRRSEPEPNSKAAEVCLPEGFEDRTR
C0PRA8______________GMDSKDEIPFHVAEILFSSSHKLAGPFEQWLDGQMN-------NIKAPNSFPPPVCIISEIYTGWVHSSGAKFGIPTVVFHTYGAFAMSVMHSLFTYMPHNSVEGDDEYFGVPELSFDLKLRKSDLLVKLRHPNSYPLEGFVREEIKQSMEGW-GILINTFYDLDSLGIDHMRNLTGRPVWSIGPILPPAVFDDRGIDHESMNSRGKAADIAEEECLKWLDTRSPQSVVFVCFGSHCILNEKQIRAVAVGLEASGQAFIWAIKCLHTETKPKGTDVGLPEGFKERTR

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
90	60		40		1.0
100		80		20	0.995493
105			80	20	0.995493
131	20		80		0.995493
155	40			60	1.0
172	50	50			1.0
186	83	16			0.994512
199	50	50			1.0
238		87		12	0.992554
246			12	87	0.992554
262	66		33		1.0
292	44		55		1.0
318		22		77	0.999999
380		16		83	0.994512
442	25		75		0.996473
476	75			25	0.996473
477			25	75	0.996473
479	33		66		1.0
480		66		33	1.0
481	16	83			0.994512
483		83	16		0.994512
484			83	16	0.994512
485		16	83		0.994512
534		80		20	0.995493
545			20	80	0.995493
580		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain