SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1800

Length: 1150 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1800

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	rif1; r-interacting factor1	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	emsy n terminus domain-containing protein	-	-	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	EMSY N-terminal	IPR005491	-	0.0	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA46

Fln msg: Distance to subject end: 23 aas, your sequence is shorter than subject: 383 - 497

Fln protein: ETLMTELRKELRVSDAEHRELLGKVNADSVLRQIRQWRESGFHQPGFTSNVVPPSGPTHSPTVSVSQKKQKTTHVMSSMHLQPPPNRHQSPAPSSSVPFAATSKQGDPLGVRGRKSKDHSQLVVPTVVKRRPVPTSVPASGMEQNVHKRPLGRPPGKSHSAVVANVDSLIGRKVMTRWPQDNNFYEAIITDYNPEMGTHALVYDFETPKETWEWVNLKEISPADIRWDGAPPEGFGQGFGNGNKNSVGYGGISHSNKGRGALKGQSIIDSTPSQNDTGRRDPGDIELRQTDKLIKEVERLVGVSYPDPADFDKAKKVLKDHELSLLEAIERLAEVSDDDGRNPPSRTHSVDYSRV*QTNRNKRASADEYDTEDDARGEGSDRE

Protein Length: 384

Fln nts: AGAGACATTAATGACCGAATTAAGGAAAGAACTAAGGGTTTCTGATGCGGAGCACAGGGAACTTCTAGGGAAAGTTAATGCAGACAGTGTACTTAGACAAATAAGACAATGGAGAGAGTCAGGCTTTCACCAACCAGGATTTACATCCAATGTTGTACCTCCTTCCGGTCCTACACACAGTCCCACTGTTTCAGTATCACAAAAGAAGCAAAAGACTACACATGTAATGTCAAGCATGCATTTACAGCCTCCACCAAATCGCCATCAGTCACCAGCTCCGTCATCATCAGTCCCATTTGCAGCAACATCGAAACAGGGAGATCCTCTGGGAGTTCGAGGCAGGAAATCCAAAGATCACTCGCAGCTGGTTGTGCCTACAGTAGTGAAACGTCGACCTGTTCCAACATCAGTTCCAGCATCTGGGATGGAACAAAATGTACATAAAAGACCACTGGGGAGGCCACCTGGAAAAAGTCATTCTGCGGTAGTAGCCAATGTTGATTCTTTGATAGGTCGAAAAGTGATGACGAGGTGGCCCCAGGACAATAATTTCTATGAGGCTATTATCACAGATTATAATCCTGAAATGGGAACACACGCATTGGTTTATGACTTTGAAACTCCAAAGGAGACATGGGAATGGGTTAATTTGAAAGAGATATCACCTGCAGATATTCGATGGGATGGTGCTCCTCCTGAAGGATTTGGTCAAGGATTTGGAAATGGCAATAAAAACTCAGTTGGTTATGGAGGTATATCACATTCTAATAAGGGGAGAGGTGCTCTCAAGGGCCAGTCTATAATAGACTCTACACCTTCACAAAATGACACAGGTAGAAGAGATCCAGGAGATATTGAGTTACGACAAACAGATAAACTTATAAAGGAGGTGGAAAGGCTCGTTGGAGTAAGTTATCCCGATCCTGCAGATTTCGACAAAGCTAAGAAGGTGTTAAAGGATCATGAATTATCTCTACTTGAAGCAATTGAGAGATTAGCTGAAGTGTCTGATGATGATGGACGGAACCCTCCATCACGTACACACTCCGTTGACTACAGTAGAGTGTGACAAACTAACAGAAACAAACGTGCCTCTGCAGATGAGTATGACACTGAAGACGATGCCAGGGGAGAAGGCTCAGACAGAGAG

Fln Alignment:

sp_v1.1_unigene1800___ETLMTELRKELRVSDAEHRELLGKVNADSVLRQIRQWRESGFHQPGFTSNVVPPSGPTHSPTVSVSQKKQKTTHVMSSMHLQPPPNRHQXXXXXXXXXXXXXXKQGDPLGVRGRKSKDHSQLXXXXXXXXXXXXXXXX-ASGMEQNVHKRPLGRPPGKSHSAVVANVDSLIGRKVMTRWPQDNNFYEAIITDYNPEMGTHALVYDFETPKETWEWVNLKEISPADIRWDGAPP----EXXXXXXXXXXKNSVGYGG-ISHSNKGRGALKGQSIIDSTPSQNDTGRRDPGDIELRQTDKLIKEVERLVGVSYPDPADFDKAKKVLKDHELSLLEAIERLAEVSD---DDGRNP-PSRTHSVDYS---RV*QTNRNKRASADEYDTEDDARGEGSDRE
D5AA46______________EGLMSELRKELRVSDEEHRELLGRVNADDLLKRIREWRQGGANQGGLMSTAAPDHDPTPSPSVSASRKKQKTAHILPSLPMPSQSTLHPLSVGAPSQPSSSAAKRGTPVGAKNKKPKTNQTMAVVSPPVKPQQFQPAVPVAGRVQIANRGPPG-PSGLSEPPEAATVDPLIGRKVRTRWPEDNNFYEAVITDYNPQQGLHALVYDINTTRETWEWVNLKEITPGDIMWDWEGPAGSGRGSRGAVGRGIKKSSGRGGLVSTTGRGRGISKGQPRKDFAPSQNGIGKKVPGDIEILHTDTLLKEVERIFGGPQPDPADMEKAKKLLKEHEQSLVDAIARLAEASDGESEDGRHPLPSHTHSIDRERGWRNMQYNGNQHTADDEDDTAGDGRAEGSDGE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
350	85		14		0.993533
741	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain