SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1767

Length: 2212 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1767
TGAGGGAGGATGGGCAAGGGGTTGCGCTGAGCTGGGTTTATGGTTTTAGTGTTTTACGGGAAATAATGTGATCAAAGCATTTCTAGTTACAGCGGATCTCGTGTTTACGAAATTCTCCTGTCTTTGGGGCAAATAATCCACGACTATCCACGACTTTGACTTGATTGCTTCTTTTCAAAGGGAATTTCGTCTACCAAAGTAGCGAAAGCAGCGTCAGCGGTTCGAGCCCCCACCACCCCGGGGAATTTAGAAGTGGGAGGAGGAGGTTCAATGGTTGAGCATAAGACAGAAACATCAGCTCTGCAGAACAAAGATGATAGCGTGTTTCGATCTCTGTACTCGGACGGCAAAGAAGCTGCTGCTGTTAACACGCTTATGAATCTGGCCGAGGAGGCAAAGCTCACCAATGCGGAAGTGAATGCTCCGGGCCAAACCATTCTCAGCGTCTGCAAGTCTCTCATTGCTGGTGGTGTTGCCGGAGGAGTGTCCCGCTCTGCCGTGGCTCCTTTAGAAAGGCTCAAAATTCTGCTTCAGGTTCAAAATCCTCTCAACCCTAAATACAATGGCATGGTCCAAGGGTTACAGCATATATGGCGTACAGAAGGTATTCGTGGATTTTTCAAAGGGAATGGTACAAATTGTGCTAGGATAGTACCCAATTCTGCTGTGAAATTTTACAGCTATGAGCAGGCATCCAGTGCAATCCTTTGGCTTTATAGAAGACAGACGGGAAATGAAAATGCCGAGCATACACCTGTCTCACGTCTTGCAGCAGGAGCTTGCGCTGGAATAATTGCCATGTCTGCAACTTACCCAATGGATATGGTTCGGGGGAGGCTGACTGTCCAGACAGAGAACTCTCCTAATCAATATCGTGGTATGTTCCATGCTATGGGAACTGTCTTGCGTGAAGAAGGTCCGAAAGCTTTGTACAAAGGCTGGTTACCATCAGTGATTGGAGTGATTCCTTATGTTGGGTTGAATTTTGCTGTGTATGAGACACTCAAGGACTGGGTGATGAAAAACAAACCACTGGGATTGGCTGAGGACTCAGAGTTGAATGTGGTAACTAAACTGGCTTGTGGAGCTGCTGCTGGAACTGTTGGGCAGACTGTGGCCTATCCTCTGGATGTAGTACGAAGGAGAATGCAAATGAGTGGATGGAAGGATGCTGCTTCTGTTGTAACTGGAGATGGAAGAAATAAGGCACCTGTTCATTATTCTGGGATGGTTGATACTTTCAGGCAAACAGTGAGGAATGAGGGGATTGGTGCATTATACAAGGGCCTGGTTCCAAATTCAGTGAAGGTGGTGCCGTCTATTGCGCTTGCTTTTGTGACATATGAAGTCATGAAGGACTTAATGGGTGTAGAATTGAGGATTTCAGATTGAAGAAGCAGGTTTACCCTCATCTTTTCTATTCATGGGGTCATTGCTTTAATGCATGAGACAGCTTCAGTAAGAAAGATTTTGTGGCATAGAGGTTGGGAATAGGGTTCAGTTTTCTATGTAACCTTTCTTTGGAGGCATCATCATTCTGTTTGGTACCAGTGGCACCAGTTTGAAGTGTTAAAATGAATAAGTCTGTCCTAAGTGAAACTCTAATCATGTCGCCAAGTGAATGATTAGGTGAAATAAGGGTAATGTTGTACTAGTGGTATGCCTATATTGAGGATCAGGCTCTAATTGAACAGGTGTTGTAAGCTTCATGCATTTGTTTTAGAGATTTAGATCTCAAGTTACTAAATCAAGGACACTTGAGGCTTTGCAACCCTGTAGTTCTATAGGTCTAAAAGCTAGTGCTCCTTGGCTTCCAATTATTGTTTCCTCTGTTGGATAGCTCACATATTTTGGCCTTTTCCTTGAATGTTTCTTCTGATTTATGATTTCTAGTTTAAGAGTCGCTACGTCTGTTTATAACTCACTGATTGCTTATATACTGAAACATCCTGAATGGTTTCTCTGCACTAAGGAGTTTCCTGATCTTCCAACTACCAGAGATTTTTGGTTGCATATGTTACTTTGTTTACTCTTCAATATTACTTTACTGGAAGCTGGAGTTTCAGTGTATATTTATCAGTAATGGGAATAATTCTATACTCTAGCAATTTTTTCCTTCCTGCGCTTATACCCTTATGTAATACAGCTAAGCTGATGGTGAAATGTAGATCATTGATAATTTTTGATAGTGACAAATTTTTTGATCTTCATG

Ace file of the UniGene sp_v1.1_unigene1767

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Grave disease carrier protein, putative	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	ATP transport	GO:0015867	Biological Process	88%
Blast2go	aerobic respiration	GO:0009060	Biological Process	88%
Blast2go	ADP transport	GO:0015866	Biological Process	88%
Blast2go	AMP transport	GO:0080121	Biological Process	88%
Blast2go	AMP transmembrane transporter activity	GO:0080122	Molecular Function	88%
Blast2go	ADP transmembrane transporter activity	GO:0015217	Molecular Function	88%
Blast2go	ATP transmembrane transporter activity	GO:0005347	Molecular Function	88%
Blast2go	mitochondrion	GO:0005739	Cellular Component	88%
Blast2go	plastid	GO:0009536	Cellular Component	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADX1

Fln msg:

Fln protein: MVEHKTETSALQNKDDSVFRSLYSDGKEAAAVNTLMNLAEEAKLTNAEVNAPGQTILSVCKSLIAGGVAGGVSRSAVAPLERLKILLQVQNPLNPKYNGMVQGLQHIWRTEGIRGFFKGNGTNCARIVPNSAVKFYSYEQASSAILWLYRRQTGNENAEHTPVSRLAAGACAGIIAMSATYPMDMVRGRLTVQTENSPNQYRGMFHAMGTVLREEGPKALYKGWLPSVIGVIPYVGLNFAVYETLKDWVMKNKPLGLAEDSELNVVTKLACGAAAGTVGQTVAYPLDVVRRRMQMSGWKDAASVVTGDGRNKAPVHYSGMVDTFRQTVRNEGIGALYKGLVPNSVKVVPSIALAFVTYEVMKDLMGVELRISD*

Protein Length: 375

Fln nts: TGAGGGAGGATGGGCAAGGGGTTGCGCTGAGCTGGGTTTATGGTTTTAGTGTTTTACGGGAAATAATGTGATCAAAGCATTTCTAGTTACAGCGGATCTCGTGTTTACGAAATTCTCCTGTCTTTGGGGCAAATAATCCACGACTATCCACGACTTTGACTTGATTGCTTCTTTTCAAAGGGAATTTCGTCTACCAAAGTAGCGAAAGCAGCGTCAGCGGTTCGAGCCCCCACCACCCCGGGGAATTTAGAAGTGGGAGGAGGAGGTTCA_-_ATGGTTGAGCATAAGACAGAAACATCAGCTCTGCAGAACAAAGATGATAGCGTGTTTCGATCTCTGTACTCGGACGGCAAAGAAGCTGCTGCTGTTAACACGCTTATGAATCTGGCCGAGGAGGCAAAGCTCACCAATGCGGAAGTGAATGCTCCGGGCCAAACCATTCTCAGCGTCTGCAAGTCTCTCATTGCTGGTGGTGTTGCCGGAGGAGTGTCCCGCTCTGCCGTGGCTCCTTTAGAAAGGCTCAAAATTCTGCTTCAGGTTCAAAATCCTCTCAACCCTAAATACAATGGCATGGTCCAAGGGTTACAGCATATATGGCGTACAGAAGGTATTCGTGGATTTTTCAAAGGGAATGGTACAAATTGTGCTAGGATAGTACCCAATTCTGCTGTGAAATTTTACAGCTATGAGCAGGCATCCAGTGCAATCCTTTGGCTTTATAGAAGACAGACGGGAAATGAAAATGCCGAGCATACACCTGTCTCACGTCTTGCAGCAGGAGCTTGCGCTGGAATAATTGCCATGTCTGCAACTTACCCAATGGATATGGTTCGGGGGAGGCTGACTGTCCAGACAGAGAACTCTCCTAATCAATATCGTGGTATGTTCCATGCTATGGGAACTGTCTTGCGTGAAGAAGGTCCGAAAGCTTTGTACAAAGGCTGGTTACCATCAGTGATTGGAGTGATTCCTTATGTTGGGTTGAATTTTGCTGTGTATGAGACACTCAAGGACTGGGTGATGAAAAACAAACCACTGGGATTGGCTGAGGACTCAGAGTTGAATGTGGTAACTAAACTGGCTTGTGGAGCTGCTGCTGGAACTGTTGGGCAGACTGTGGCCTATCCTCTGGATGTAGTACGAAGGAGAATGCAAATGAGTGGATGGAAGGATGCTGCTTCTGTTGTAACTGGAGATGGAAGAAATAAGGCACCTGTTCATTATTCTGGGATGGTTGATACTTTCAGGCAAACAGTGAGGAATGAGGGGATTGGTGCATTATACAAGGGCCTGGTTCCAAATTCAGTGAAGGTGGTGCCGTCTATTGCGCTTGCTTTTGTGACATATGAAGTCATGAAGGACTTAATGGGTGTAGAATTGAGGATTTCAGATTGA___AGAAGCAGGTTTACCCTCATCTTTTCTATTCATGGGGTCATTGCTTTAATGCATGAGACAGCTTCAGTAAGAAAGATTTTGTGGCATAGAGGTTGGGAATAGGGTTCAGTTTTCTATGTAACCTTTCTTTGGAGGCATCATCATTCTGTTTGGTACCAGTGGCACCAGTTTGAAGTGTTAAAATGAATAAGTCTGTCCTAAGTGAAACTCTAATCATGTCGCCAAGTGAATGATTAGGTGAAATAAGGGTAATGTTGTACTAGTGGTATGCCTATATTGAGGATCAGGCTCTAATTGAACAGGTGTTGTAAGCTTCATGCATTTGTTTTAGAGATTTAGATCTCAAGTTACTAAATCAAGGACACTTGAGGCTTTGCAACCCTGTAGTTCTATAGGTCTAAAAGCTAGTGCTCCTTGGCTTCCAATTATTGTTTCCTCTGTTGGATAGCTCACATATTTTGGCCTTTTCCTTGAATGTTTCTTCTGATTTATGATTTCTAGTTTAAGAGTCGCTACGTCTGTTTATAACTCACTGATTGCTTATATACTGAAACATCCTGAATGGTTTCTCTGCACTAAGGAGTTTCCTGATCTTCCAACTACCAGAGATTTTTGGTTGCATATGTTACTTTGTTTACTCTTCAATATTACTTTACTGGAAGCTGGAGTTTCAGTGTATATTTATCAGTAATGGGAATAATTCTATACTCTAGCAATTTTTTCCTTCCTGCGCTTATACCCTTATGTAATACAGCTAAGCTGATGGTGAAATGTAGATCATTGATAATTTTTGATAGTGACAAATTTTTTGATCTTCATG

Fln Alignment:

sp_v1.1_unigene1767___LYSDGKEAAAVNTLMNLAEEAKLTNAEVNAPGQTILSVCKSLIXXXXXXXXXXXXXXPLERLKILLQVQNPLNPKYNGMVQGLQHIWRTEGIRGFFKGNGTNCARIVPNSAVKFYSYEQASSAILWLYRRQTGNENAEHTPVSRLAAGACAGIIAMSATYPMDMVRGRLTVQTENSPNQYRGMFHAMGTVLREEGPKALYKGWLPSVIGVIPYVGLNFAVYETLKDWVMKNKPLGLAEDSELNVVTKLXXXXXXXXXXXXXXYPLDVVRRRMQMSGWKDAASVVTGDGRNKAPVHYSGMVDTFRQTVRNEGIGALYKGLVPNSVKVVPSIALAFVTYEVMKDLMGVELRISD
D5ADX1______________LYAESKEAA-VSTFVNLAEEAKLASEGVKAPGHAVLTICKSLFAGGVAGGVSRSAVAPLERLKILLQVQNPLHRKYNGTIQGLRYIWNTEGLRGLFKGNGTNCARIVPNSAVKFYSYEQASRAILWFYRQQTGNEDAELTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTENSPYQYRGMFHALSTVLREEGPRALYKGWFPSVIGVVPYVGLNFAVYESLKDWLVKSRPFGLVEGEDLSMVTKLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKDASSIVTGDGRSKAPLQYSGMVDAFRQTVRNEGFGALYRGLVPNSVKVVPSIAIAFVTYEALRDLLNVELRISD

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
261	20		80		0.995493
314	85			14	0.993533
315		85	14		0.993533
316	85		14		0.993533
317	85		14		0.993533
318	85		14		0.993533
466	11	88			0.923564
475		11		88	0.923564
972			16	83	0.994512
975	16	83			0.994512
976	16			83	0.994512
977	16			83	0.994512
979			16	83	0.994512
1204	85		14		0.993533
1243			16	83	0.994512
1245	16	83			0.994512
1247	16			83	0.994512
1248	16			83	0.994512
1344		25		75	0.996473
1459	88		11		0.923564
1460			88	11	0.923564
1461		88		11	0.923564
1462			11	88	0.923564
1464		88	11		0.923564
1466		11	88		0.923564
1467		11		88	0.923564
1468	88			11	0.923564
1469	88			11	0.923564
1471	88		11		0.923564
1472	88	11			0.923564
1473	88			11	0.923564
1475	88			11	0.923564
1476		11		88	0.923564
1477	11			88	0.923564
1478		11		88	0.923564
1480		11	88		0.923564
1481	11			88	0.923564
1972		16	83		0.999991
1973	16	83			0.999991
1974	83	16			0.999991
1975		83		16	0.999991

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain