SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1731

Length: 1873 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1731

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM17_MARPO	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	protein	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein kinase activity	GO:0004672	Molecular Function	0.0	85%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	85%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	85%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	85%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	85%
Blast2go	Protein kinase-like domain	IPR011009	-	85%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	85%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg: your sequence is shorter than subject: 362 - 431

Fln protein: GNMIISVQVLRHVTRNFSPENELGRGGFGVVYKGQLDDGTIIAVKRMEAAVVSNKGLAEFKSEIAVLSKVRHRHLVALLGYCIEGNERLLVYEYMPKGALSRHIFDWATNGLEPISWKRRLSIALDVARGMEYLHNLAHRSFIHRDLKPSNILLGDDFRAKVSDFGLVKLAPEGKYSVETRLAGTFGYLAPEYAVTGRITTKADVYSFGVVLMELITGRRALDENEPEESMHLVTWFRRMNSDKESLMRAIDGILEVTDETFESICTVAELAGHCTAREPFQRPDMGHAVNVLAPLVEKWKPKDVDNDDSGGIDFEMSLPQALKKWQAFEDKSASGLDDSQGSLPTRPTGFADSFTSADGR*

Protein Length: 363

Fln nts: CTGGAAATATGATTATATCAGTACAAGTTCTCAGGCATGTAACCAGGAATTTCAGCCCGGAAAATGAGCTTGGAAGAGGTGGGTTTGGGGTTGTATACAAGGGGCAGCTAGATGATGGCACTATAATTGCAGTTAAAAGGATGGAGGCGGCAGTTGTAAGTAACAAGGGTTTGGCGGAGTTCAAGTCAGAAATAGCGGTTTTGTCAAAAGTTAGGCATAGGCACCTGGTTGCCTTGTTGGGTTACTGCATCGAAGGCAATGAAAGGCTTTTGGTATATGAGTACATGCCAAAGGGTGCTCTTAGCAGGCATATATTTGATTGGGCCACGAATGGGCTGGAACCAATTTCATGGAAGAGACGCCTCAGTATAGCTCTGGATGTTGCGCGAGGAATGGAATATCTGCATAACCTGGCCCACAGAAGCTTTATTCATAGAGACCTTAAACCATCTAATATACTTCTTGGTGATGATTTTCGGGCAAAGGTTTCAGATTTTGGATTGGTGAAGTTGGCACCGGAAGGTAAATACTCTGTGGAGACCAGATTAGCTGGCACTTTTGGATATCTAGCACCCGAATATGCAGTTACTGGGCGAATCACCACGAAAGCAGATGTATATAGCTTTGGTGTTGTGTTGATGGAGCTTATTACTGGAAGGAGGGCACTCGATGAGAATGAACCTGAGGAAAGCATGCATTTGGTAACATGGTTTCGCCGAATGAATTCGGACAAAGAATCTTTAATGAGGGCAATAGATGGAATTCTGGAAGTTACAGATGAAACTTTTGAAAGTATTTGCACTGTTGCTGAACTAGCAGGTCATTGCACTGCACGAGAACCATTTCAACGGCCTGATATGGGCCATGCTGTCAATGTTTTGGCACCTTTGGTTGAGAAATGGAAGCCCAAAGATGTAGATAATGATGATTCTGGGGGAATTGATTTTGAGATGAGCCTCCCTCAGGCTCTGAAGAAATGGCAAGCATTCGAGGACAAAAGTGCAAGTGGATTGGATGATAGCCAAGGAAGTCTTCCAACACGTCCAACTGGGTTTGCTGATTCATTCACATCTGCTGATGGACGCTGA___AACTACATGGAAAAAACTTGGATCCAAACAATTGATAAATCTGTAGAAATACCTGTACAGGACAATATGAGGTATTCTGTCTCTTATGTATGCATTGTCTATTGTTTTTCTCGAACCCCTACTATGTTAGCAGCGGATGTGCATGGATCCTTTTGAGTTCTATGTTTATGAAAATATGAACAAGATAAGGATGCTATTTTCAGCCTAAACAGTTTGAACTCCATCTTGTGCCTTCAATTCTCTTTTGAGAAAATTTGCTGTCATCGAGTCCCTTAGCCAAGTGAAATATTTGGCTTCGTTTTGAAGCTAGATGTTGTTCAAGGCTGGAGGTTTTAGTGAAGTGAGTTCATGTATGGGAAGTTGGGTTGAATATTTGGGTGCAGACCATTTTGGTTTCTGCGATTTGATGCCAGAATAGAGTAGACAGTAGAGTATTTATTATCTAGAGGGATGATTTGATCTGTGTCCACCCATCCGTTAAAGTTATTGCCTGAGCAAATGTGAATGTGTGGGTTGGCAGATGAGCTACCAGTTTGCGTCTGTCATTTTTAGGCAAGTATTTAAGGAGATCTGAAAGGTGTGAAACACTGAACTATTTTGAATGCGATCCAAATTCTTCCATCAGCGGTTTTGTCAAGTATAGTCTAGCAAAATCCATTAGTTGCAGGGAAGTGTGTTGGCCATACTTTTATGCAATTTGAGATGGGAAGAGGTCTGTTTACTGTATTGCAGTGGGCAGACACAAAAATATTGTAAGCAGCAAGTGCAGCTCTCCAAAGCACAGT

Fln Alignment:

sp_v1.1_unigene1731___LRHVTRNFSPENELGRGGFGVVYKGQLDDGTIIAVKRMEAAVVSNK--------GLAEFKSEIAVLSKVRHRHLVALLGYCIEGNERLLVYEYMPKGALSRHIFDWATNGLEPISWKRRLSIALDVARGMEYLHNLAHRSFIHRDLKPSNILLGDDFRAKVSDFGLVKLAPEG-KYSVETRLAGTFGYLAPEYAVTGRITTKADVYSFGVVLMELITGRRALDENEPEESMHLVTWFRRMNSDKESLMRAIDGILEVTDETFESICTVAELAGHCTAREPFQRPDMGHAVNVLAPLV
B8LKY1______________LKSATRNFRPESVLGGGGFGYVFKGWIEENGTAAVKPGTGLTVAVKTLNPDGLQGHKEWLAEVNFLGQLRHANLVKLIGYCIEDNQRLLVYEYMPRGSLENHLF---RKGALPLPWSTRMKIALGAAKGLEFLHGGAEKAVIYRDFKTSNILLDSEYNAKLSDFGLARDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKHRSNGEQNLVEWARPYLVDKRKLYRLVDPRLS-GHYSIKGAQKVAQLAHYCLSRDPKARPTMNDVVEVLTPLL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
752	80		20		0.995493
1171		50	50		1.0
1183		23		76	1.0
1280			50	50	1.0
1324	85		14		0.993533
1505	90			10	0.90298
1508		11	88		0.923564
1510	88			11	0.923564
1512	88		11		0.923564
1514	88			11	0.923564
1518		12	87		0.992554
1520		12	87		0.992554
1626			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain