SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1721

Length: 1116 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1721

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Propionyl-CoA carboxylase beta chain n=4 Tax=Poaceae RepID=B6SWZ4_MAIZE	-	-	77%
FL-Next	sp=Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	73%
Blast2go	propionyl- carboxylase beta chain	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Methylcrotonoyl-CoA carboxylase.	EC:6.4.1.4	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Valine, leucine and isoleucine degradation	00280		0.0	83%
Blast2go	Metabolic pathways	01100		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	leucine catabolic process	GO:0006552	Biological Process	83%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	83%
Blast2go	methylcrotonoyl-CoA carboxylase activity	GO:0004485	Molecular Function	83%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Carboxyl transferase	IPR000022	-	0.0	83%
Blast2go	Acetyl-coenzyme A carboxyltransferase, C-terminal	IPR011763	-	0.0	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LDD8

Fln msg: your sequence is shorter than subject: 297 - 587

Fln protein: VYYANDELHALDIGRRIVKNLHMAGNEEKIKGWTCPISEDEEPLYDAKELRGIVSADRKQSFDVRSIIARIVDGSVFDEFKKLYGTTLVTGFARIYGQPVGIIGNNGILFTESALKGAHFIQLCTQRQIPLIFLQNITGFMVGSRSEASGIAKAGAKMVMAVSCAKVPKITIIVGGSFGAGNYGMCGRAYNPNFLFLWPTARISVMGGAQAAGVLAQIERDNRKRQGIQWSTEEEEALKAKVTESYEREGNPYYATARLWDDGIIDPADTRTVLGLALSASKQDASVKTTYGVFRM*

Protein Length: 298

Fln nts: GTATATTATGCCAATGATGAACTGCACGCACTTGACATTGGAAGGAGAATAGTGAAAAACTTGCATATGGCTGGAAATGAGGAGAAAATCAAAGGTTGGACATGTCCTATTTCTGAAGATGAGGAACCTTTATATGATGCAAAGGAGCTTCGTGGCATTGTGTCTGCAGATCGTAAACAGTCATTTGATGTCCGTTCTATAATTGCTCGCATAGTTGATGGAAGTGTATTTGATGAATTCAAGAAGCTATATGGCACAACTCTTGTTACAGGTTTTGCAAGAATCTATGGACAGCCTGTAGGCATAATTGGAAACAATGGCATTTTATTCACAGAATCTGCTCTAAAAGGTGCTCACTTCATACAGCTGTGTACACAGCGCCAGATTCCCTTGATATTTCTTCAGAATATCACAGGATTTATGGTTGGCTCAAGATCAGAAGCAAGCGGTATTGCCAAGGCAGGAGCGAAGATGGTGATGGCAGTTTCCTGTGCAAAGGTTCCAAAGATTACAATTATAGTTGGAGGCAGCTTTGGGGCTGGGAATTATGGAATGTGTGGACGTGCATACAATCCCAATTTTTTGTTTCTTTGGCCCACAGCCCGAATTTCAGTCATGGGAGGTGCCCAGGCTGCTGGAGTTCTTGCTCAAATTGAAAGGGACAATCGCAAGCGACAGGGTATTCAGTGGAGCACAGAGGAGGAAGAAGCCTTAAAAGCCAAGGTGACAGAGTCTTATGAAAGAGAAGGAAATCCATATTATGCAACTGCAAGACTCTGGGATGATGGCATTATTGATCCTGCAGATACAAGAACGGTTTTAGGTTTGGCTTTATCTGCTTCAAAACAAGACGCTTCTGTTAAAACAACATACGGTGTTTTTAGGATGTAA___GTGGAAAAGCACTGTGGTGCCAAGAAAGTTGTTGTAAGGCATCAATAAAAGTTCAAAAGTTCAAAATTTGTAAATACATTGTTTGAACTAATGGTAAATTTTCCAGCAATTCCATAAAGTTTTTCAGAAACAAATACCTTTCATGGAAAGTCTTAAGACAGTCAAAGTCGTAATATTTGTTATTTCAAAAGTACACAAATTTTCATCGAAAATTATAGTTGTGGC

Fln Alignment:

sp_v1.1_unigene1721___YYANDELHALDIGRRIVKNLHMAGNEEKIKGWTCPISEDEEPLYDAKELRGIVSADRKQSFDVRSIIARIVDGSVFDEFKKLYGTTLVTGFARIYGQPVGIIGNNGILFTESALKGAHFIQLCTQRQIPLIFLQNITGFMVGSRSEASGIAKAGAKMVMAVSCAKVPKITIIVGGSFGAGNYGMCGRAYNPNFLFLWPTARISVMGGAQAAGVLAQIERDNRKRQGIQWSTEEEEALKAKVTESYEREGNPYYATARLWDDGIIDPADTRTVLGLALSASKQDASVKTTYGVFRM
Q9LDD8______________YFAQDELHGLAIGRNIVKNLHMAAKQGMEGTFGSKNLVYKEPLYDINELRSIAPVDHKQQFDVRSIIARIVDGSEFDEFKKQYGTTLVTGFARIYGQTVGIIGNNGILFNESALKGAHFIELCSQRKIPLVFLQNITGFMVGSRAEANGIAKAGAKMVMAVSCAKVPKITIITGASFGAGNYAMCGRAYSPDFMFIWPNARIGIMGGAQAAGVLTQIERATKKRQGIKWTEEEEEAFKKKTVDAYEREANPYYSTARLWDDGVIDPCDTRKVLGLCLSAALNRPLEDTRFGVFRM

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
490		87	12		0.992554
491	12			87	0.992554
497	87	12			0.992554
498	87			12	0.992554
499	87			12	0.992554
502		11		88	0.923564
507		88		11	0.923564
508	77		11	11	0.968132
509	88	11			0.923564
510	88	11			0.923564
511		11	77		0.968132
512	88			11	0.923564
514			11	88	0.923564
515	88		11		0.923564
517	88			11	0.923564
518	88		11		0.923564
520		11		88	0.923564
524	88	11			0.923564
525	11		88		0.923564
564	11		88		0.923564
607		85		14	0.993533
820	12	87			0.992554
955		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain