SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1700

Length: 1376 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1700

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HHH domain containing protein	-	-	6.0e-05	57%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	43%
Blast2go	osmotic avoidance abnormal	-	-	3.24351e-24	53%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular organelle	GO:0043229	Cellular Component	3.24351e-24	53%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Helix-hairpin-helix motif	IPR000445	-	3.24351e-24	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7THP0

Fln msg: your sequence is shorter than subject: 279 - 659

Fln protein: VVTLAVTHRVKVTSSEESPQINSSKAGEHAGSVMAASDCQPDDYKKINTPSKTIQSQEISQADSEAPIASELNNITLPSDVAKEGSDKENRVVKELIFDDSSPPLSVRLKQLRSALTEMLTPQNSNVERYLPANVTPCSKLSGMEPSQIKQILPMTTTPSSIPCGIPAEPNTPRTPQVEHREGKEETSQVGTPLERFSARGSGLKKSLTRDYLSFLNTASREELLELRGIGEKRANDILELRQRSPEPLKELQDLEKIGLSSKQIKTIFNSTARQILS*

Protein Length: 280

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCGTGTAAAGGTAACCTCAAGTGAGGAAAGTCCCCAGATAAACTCTTCAAAAGCTGGAGAACATGCTGGTTCAGTAATGGCTGCATCGGATTGTCAGCCAGACGACTATAAGAAGATCAACACTCCCTCAAAAACAATACAATCGCAAGAAATTAGCCAAGCTGATTCTGAAGCTCCTATTGCCAGTGAACTAAATAATATAACCCTGCCCAGTGATGTGGCTAAAGAGGGTTCTGATAAAGAGAACAGGGTGGTCAAAGAATTGATTTTTGATGACTCTTCACCCCCATTGAGCGTAAGGTTAAAACAGCTACGAAGTGCTTTGACAGAGATGCTTACCCCACAGAATTCCAATGTAGAAAGATATCTTCCAGCAAATGTTACCCCCTGTAGCAAGCTTTCTGGCATGGAACCATCCCAGATAAAGCAAATTCTTCCAATGACTACAACCCCCTCTTCAATACCTTGTGGAATACCCGCAGAGCCAAACACACCAAGGACTCCCCAAGTGGAACATAGGGAGGGAAAAGAAGAAACTTCCCAAGTTGGAACACCATTAGAGAGGTTCAGTGCACGTGGTTCAGGGTTAAAGAAATCTCTCACCAGAGATTACCTGTCTTTCCTCAATACTGCTAGCAGAGAGGAGCTGCTTGAGTTGAGGGGTATTGGAGAGAAGAGAGCCAATGATATTCTTGAACTACGACAAAGGTCTCCTGAGCCATTGAAGGAGCTTCAGGATCTAGAAAAAATTGGGCTTTCTTCCAAGCAGATAAAAACCATCTTCAATAGTACTGCTCGGCAAATACTATCTTGA___ATGAAAGGGATGCTGCAGTCTTCCATAAGTCACATCCTCAGTTCATTTATTTTGAATTGTACAATAGGCATTTATTGTTTTGTAATTTGCTATGCTGGATTTGCATTTTTTTCCCAACCTTTGGGAAAATGTTTTTATTTACCAGGTGATGGTAAATCAAGTGCATAGAACTGTGCTTTTTAAATTCCAGTAATTGTCATATTTTATTGGACCTTTTCTGTCAATGACTTGAGGTATGCTAACAGAGCTTTGaGTGGGGGCTAGTACTCTATCAGTCATTGGCAAGTATAcTGCACTGTAAATTTGGATCAGAAATTTCTTTTGAAGAATATTCCATGGTTGTTTGAATCTTTTGTTTGAACATGTGTACGATGATATTTTTGTCCACTGTATGACAATAATTTACTCTGGGACACTGGCTAGCTTATATTTGGAGCATGTATTCGCTTGACTTGTATGGCTCTAGACTTATGCATTACAGAAGCAAATTCTGAGTCTCGCGGTTAAGTCGTTTTGACATTATTTTAAGTACTTAGCC

Fln Alignment:

sp_v1.1_unigene1700___ASELNNITLPSDVAKEGSDKENRVVKELIFDDSSPPLSVRLKQLRSALTEMLTPQNSNVERYLPANVTPCSKLSGMEPSQIKQILPMTTTPSSIPCGIPAEPNTPRTPQVEHREGKEETSQVGTPLERFSARGSGLKKSLTRDYLSFLNTASRXXXXXXRGIGEKRANDILELRQRSPEPLKELQDLEKIGLSSKQIKTIFNSTARQI
D7THP0______________ASETNTI-LPDDAL--ANDKKMTTMKSAN-SIGSPPISEKFKALQGSLRKVLSPVNSDDSR------KPLEDLSSK--GQV--------------CSVPFEPKTPKTP-TNMTCANDNFQMVDTPLDKFNVRTSNLKSSLIQEYIDFLNTASIEELLELKGIGQKRAEYILELREAS--PLKMLSDLEKIGLSSKQVYNVFGRTAKGI

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
757			33	66	0.997452
760	66		33		0.997452
761			66	33	0.997452
764		33		66	0.997452
767	66			33	0.997452
769	66			33	0.997452
770	66		33		0.997452
771	66			33	0.997452
772	66	33			0.997452
774	66	33			0.997452
776		33		66	0.997452
777	33		66		0.997452
918			33	66	0.997452
953	25	75			0.996473
954		75		25	0.996473
955	75		25		0.996473
956	75		25		0.996473
957		75	25		0.996473
1045		20		80	0.995493
1046	80		20		0.995493
1048		20		80	0.995493
1057			20	80	0.995493
1058			20	80	0.995493
1065	80	20			0.995493
1094		60		40	1.0
1132			80	20	0.995493
1183	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain