SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1694

Length: 1618 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1694

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transcription factor, putative	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	lhc-related protein	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Chlorophyll a/b binding protein domain	IPR023329	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXM6

Fln msg: your sequence is shorter than subject: 323 - 371

Fln protein: MACMLPQPTAFFLQQATCRKPTLSSLPSCLSGIPSRGSGAEDLFRTFGHLSFVTTRPRIVVKAEQSESGGVSSAVKAEDNGTGGANAVMEVKGSESGESSGDGNGITGASFAEKEQEASKSRKPSPLERGGTLSGAEAKGKDPSPAAILGTNSSSSFSNVNGRFEDPRWENGTWNLQQFITEGKVDWDAVIDAEVRRRKWLEDNPESSSNKEPVVFDTSIVPWWAWVKRFHLPQAELLNGRAAMIGFFMAYFIDSLTGVGIVDQTSSFFGKLLLFVTVVGVLLIRKNEDLETVKQLIKESTFYDQQWQATWQDETSQQSEKE*

Protein Length: 324

Fln nts: CGTCGTGACCTTGGCTGTCAGTGGGTCATGATAATATGGAGGAGGTAACAGATAAGTAGCAGCGCGTGACGTATATATATCCACACTCCACAGATATCTGTGGTAGTGACTGGACTGGATTTGGAAGCCGAAATCAACTGCTCGAATTGGCATGTGGAGGGAAGGCCAGGAGGACTGACCACTCAAATTTTGCCGGATACTATTCTGTACTTTTCTCACTGTGCATCGATTACATTAATCTTTGCTCCTGAGAATACAGTCAAGTAGTTTTCTTTGGCTGTTTACATTTTCTTCTGGAACCCATTTCAGGCTTTGTATAATTGGGTACATGCCACATAGTGTCTTGGTACAATAGAATCC_-_ATGGCTTGTATGCTACCACAACCAACTGCTTTCTTTCTGCAACAAGCCACATGCAGAAAACCGACACTGAGTTCTCTTCCTTCATGCCTCTCTGGAATCCCTTCAAGAGGTTCAGGGGCTGAGGACTTGTTCAGGACTTTTGGGCACTTGAGTTTTGTCACGACAAGGCCCCGAATTGTGGTGAAGGCAGAGCAAAGTGAAAGTGGGGGGGTGAGTTCTGCGGTAAAAGCAGAAGATAATGGAACAGGAGGAGCAAACGCTGTAATGGAGGTGAAGGGTAGTGAATCCGGGGAAAGCTCCGGTGATGGCAATGGAATAACAGGGGCAAGCTTCGCAGAAAAGGAACAAGAGGCCAGCAAGAGCAGGAAGCCTTCTCCTTTGGAGAGAGGGGGGACACTCTCAGGGGCCGAGGCTAAGGGAAAGGACCCTAGCCCTGCTGCAATACTTGGAACAAATTCATCATCCTCCTTTTCTAATGTCAATGGAAGGTTTGAAGATCCCAGGTGGGAGAATGGTACATGGAATCTTCAGCAATTTATCACAGAAGGCAAAGTGGATTGGGATGCTGTAATTGATGCTGAGGTGCGTAGGAGGAAATGGCTAGAAGATAACCCTGAATCATCTAGCAACAAGGAACCTGTTGTCTTTGATACTTCTATAGTACCATGGTGGGCATGGGTTAAGAGGTTCCATTTGCCACAGGCAGAACTGCTGAATGGTCGTGCAGCAATGATAGGATTCTTCATGGCTTATTTCATTGATAGCTTGACTGGGGTTGGAATTGTGGATCAAACGAGCAGTTTTTTCGGCAAACTTTTATTATTTGTTACAGTTGTTGGAGTTCTATTGATTCGAAAGAATGAAGATTTGGAGACAGTAAAGCAGCTAATAAAGGAATCAACTTTTTATGATCAGCAATGGCAAGCAACATGGCAGGATGAGACATCACAGCAATCGGAAAAAGAATAA___CTAACTCCTCTGAAGTTTAGCACGAATCTTAATTGTAATTGTGCCTGTATATTAAGTTTGCTTTTCTTCTCTTCCTGGTTATTTCCATCAATGTAACGGCTTGCCGTCCTGTTCAATCAGGACATTGAAACCTTGCCATTTGAGTTTGAGATCCCAAACACAAATGAATTTCATTCATGAATACTCTATTTCCATGCGCAAGATGGCAAGAACTTGGACTATTTTGTTAGGAGAGGTATGTAATCTAGATTCAGAAGGAAAGCATGCATTGTCAATAAGTTTTTTTTTT

Fln Alignment:

sp_v1.1_unigene1694___MACMLPQPTAFFLQQATCRKPTLSSLPSCLSGIPSRGSGAEDLFRTFGHLSFVTTRPRIVVKAEQSESGGVSSAVKAEDNGT--------------------------------------------------GGANAVMEVKXXXXXXXXXXXNGITGASFAEKEQEASKSRKPSPLERGGTLSGAEAKGKDPSPAAILGTNSSSSFSNVNGRFEDPRWENGTWNLQQFITEGKVDWDAVIDAEVRRRKWLEDNPESSSNKEPVVFDTSIVPWWAWVKRFHLPQAELLNGRAAMIGFFMAYFIDSLTGVGIVDQTSSFFGKXXXXXXXXXXXXIRKNEDLETVKQLIKESTFYDQQWQATWQDETSQQSEKE
A9NXM6______________MAGMIPQPTAFLLQQPTCRKPTLSSLPSCLSGIPSRASGAEDLFRTFGYLSLVRTRPRVAVKAEQSGSGGVSSVVKAEDNGTGVENAVIEVKGSESGENSKAEDNGTGVENAVIEVKGSESGENSKAEDNGTGVENAVIEVKGSESGENSVDGNGITGASSAEKVQEASKSRKSSPLERGGTLIGAEAKGKDPSPAAVFGINSSS-FSNVNGRFEDLRWENGTWNIQQFIKDNKVDWDAVIDAEVRRRKWLEDNPETSSNKDPVVFDTSIVPWWAWVKRFHLPQAELLNGRAAMIGFFMAYFIDSLTGVGIVDQTSSFFGKLLLFVTIVGVLLIRKNEDLETIKQLVRESTFYDQQWQATWQDETSQQSEKE

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
625		12		87	0.992554
632		12	87		0.992554
633			87	12	0.992554
636	87		12		0.992554
638	12		87		0.992554
639		14	85		0.993533
640	14		85		0.993533
641	14			85	0.993533
643			85	14	0.993533
1032	11			77	0.968132
1034			88	11	0.923564
1035	11		88		0.923564
1045	88		11		0.923564
1054	88	11			0.923564
1098	88		11		0.923564
1230		12		87	0.992554
1256	88		11		0.923564
1282			12	87	0.992554
1311	88		11		0.923564
1323	85		14		0.993533
1324	85		14		0.993533
1325	85		14		0.993533
1374		14		85	0.993533
1480			75	25	0.996473
1498	25		75		0.996473
1520	50	50			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain