SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1680

Length: 1817 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1680

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA-dependent RNA polymerase, putative n=1 Tax=Ricinus communis RepID=B9RP51_RICCO	-	-	59%
FL-Next	sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress).	-	-	57%
Blast2go	rna-dependent rna polymerase 6	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	carpel development	GO:0048440	Biological Process	70%
Blast2go	production of miRNAs involved in gene silencing by miRNA	GO:0035196	Biological Process	70%
Blast2go	virus induced gene silencing	GO:0009616	Biological Process	70%
Blast2go	production of ta-siRNAs involved in RNA interference	GO:0010267	Biological Process	70%
Blast2go	leaf development	GO:0048366	Biological Process	70%
Blast2go	recognition of pollen	GO:0048544	Biological Process	70%
Blast2go	nucleus	GO:0005634	Cellular Component	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA-dependent RNA polymerase, eukaryotic-type	IPR007855	-	0.0	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SG02

Fln msg: your sequence is shorter than subject: 498 - 1196

Fln protein: VEVAFDVLTTSCTGDLQTTAALMLSAGFKPGMEPHLRDMLSSIRAVQLDELLTKCRIFIPQGRWLIGCLDEIGELEYGQCFINVSNPPLEGCFLKDGSNFEEKVTSPTIVKGKVVVAKNPCLHPGDIRILEAVDAPSLHHLVDCIVFPHKGHRPHPNEASGSDLDGDIYFVSWDSSLRPPSGESWKPMDYDAGEVKKSKAQVKTKDIIEFFAQHMVNDKLGVICHAHVVQADLSDYGALDENCLKLAELAAMAVDFDKTGKVVVMPQHLKPKIYPDFMNKEDLVCYKSEKVLGVLYRRIKDMFGVELEKWKTNADCENVFEALPYDTDLEAAGFQEYIEEAWNYKCSYDRQLRALLGQFSVKREGEVVTGRISSLSKLNSRRQGEIKERLQHAYKALRKEFRLVFEGTKDSENPEPRKQSDYEAKASAWYHVAYHPTWVQKAMELIEPNGYHSAPLLSFPWVSVDYLAQIKLQKLCPDVDYSSTVRSFTSFLVGKAE*

Protein Length: 499

Fln nts: TAGTTGAAGTGGCATTTGACGTATTGACAACATCATGCACAGGAGATTTGCAAACTACTGCTGCTCTGATGCTAAGTGCTGGTTTTAAACCCGGAATGGAGCCTCACTTAAGAGATATGCTTTCTTCTATAAGAGCCGTCCAGTTAGATGAGCTTTTGACAAAATGTAGGATTTTCATTCCCCAGGGTAGATGGTTAATTGGCTGTTTGGATGAAATAGGGGAGTTGGAATATGGCCAATGTTTCATCAATGTTTCAAACCCGCCGTTGGAGGGCTGTTTTCTCAAAGATGGTTCAAACTTTGAAGAAAAGGTAACAAGTCCAACAATTGTAAAAGGCAAaGTcGTTGTGGCCAAGAACCCTTGCCTGCATCCTGGtGATATTCGGATTCTAGAAGCTGTGGATgCTCCTAGTTTGCATCATTTAGTTGATTGTaTTGTCTTCCCACAcAAGGGGCACAGGCCACATCCCAATGAAGCTTCTGGAAGTGATCTCGATGGAGATATTTACTTTGTTTCTTGGGACTCTAGCCTTCGTCCCCCAAGTGGCGAGAGTTGGAAACCAATGGATTATGATGCtGGTGAAGTGAAAAAATCAAAAGCACAGGTCAAAACTAAGGACATCATTGAATTTTTTGCTCAACACATGGTGAATGATAAGTTGGGTGTTATCTGCCATGCCCATGTTGTTCAGGCAGATCTAAGTGATTATGGTGCCTTAGATGAAAACTGTCTCAAACTTGCAGAGTTGGCAGCCATGGCTGTTGATTTTgaTAAAACAGGAAAAGTAGTGGTTATGCCTCAACATCTGAAACCCAAGATATATCCAGATTTCATGAATAAAGAGGACTTAGTTTGTTACAAATCAGAGAAGGTTTTGGGAGTTTTGTATCGGAGAATCAAGGATATGTTTGGGGTAGAGTTAGAAAAATGGAAAACTAATGCTGATTGTGAGAATGTATTTGAAGCACTTCCTTATGATACTGATTTGGAAGCTGCTGGATTTCAGGAATATATTGAAGAAGCTTGGAACTACAAGTGTTCATATGACCGACAGCTTCGTGCTCTGTTAGGCCAATTCAGTGTTAAAAGAGAGGGGGAGGTGGTCACAGGACGCATTTCTTCTCTCTCCAAACTTAACAGCAGGAGGCAGGGAGAAATCAAAGAAAGGTTGCAGCATGCATACAAGGCTTTAAGAAAGGAGTTTCGGTTAGTGTTTGAGGGGACAAAAGATAGTGAAAATCCTGAGCCTCGTAAACAGTCTGATTATGAAGCCAAAGCATCTGCATGGTACCATGTAGCTTATCATCCAACATGGGTGCAGAAGGCCATGGAACTAATAGAACCAAATGGTTATCACAGTGCTCCACTTCTGAGCTTTCCATGGGTTTCTGTTGATTACTTAGCCCAGATTAAGTTGCAAAAGCTCTGTCCAGATGTCGATTATAGTTCAACAGTCAGATCTTTTACTAGTTTTCTGGTTGGTAAAGCAGAATGA___TCCAAAGTTTTCTTGTTTTCTTCCCTTGGCAGTAAAGCCTTAGTTTCGAGGGTTCCTGATTACAGTTCCGTATCACATGTACTATTCTGTATACCTTAGTGCATTCGCTACCATCTTAGACTTTGAACTTAATAGCCCCTAGCCAGCAGGCCCCTCTGCAATTAACAAATGAAGAAGAATGTTTTTAGTCTGGTGAAAGTCAGCAATTAACGCAAAAAACTGGCATGTGTTTTGAAATTTGAATGCTTCCCAGAATGAACCAATGTTTATATACCACTTTGTGTTTTCTTTTAATCAGAAATCCCAAACCTTTTATCATCC

Fln Alignment:

sp_v1.1_unigene1680___EVAFDVLTTSCTGDLQTTAALMLSAGFKPGMEPHLRDMLSSIRAVQLDELLTKCRIFIPQGRWLIGCLDEIGELEYGQCFINVSNPPLEGCFLKDGSNFEEKVTSPTIVKGKVVVAKNPCLHPGDIRILEAVDAPSLHHLVDCIVFPHKGHRPHPNEASGSDLDGDIYFVSWDSSLRPPSGESWKPMDYDAGEVKKSKAQVKTKDIIEFFAQHMVNDKLGVICHAHVVQADLSDYGALDENCLKLAELAAMAVDFDKTGKVVVMPQHLKPKIYPDFMNKEDLVCYKSEKVLGVLYRRIKDMFGVELEKWKTNADCENVFEALPYDTDLEAAGFQEYIEEAWNYKCSYDRQLRALLGQFSVKREGEVVTGRISSLSKLNSRRQGEIKERLQHAYKALRKEFRLVFEGT-KDSEN-PEPRKQSDYEAKASAWYHVAYHPTWVQKAMELIEPNGYHSAPLLSFPWVSVDYLAQIKLQ-KLCPDVDYSSTVRSFTSFL
Q9SG02______________DVAFEVLTASCA-EQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAE---ASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKPVDSLAKFL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1001			40	60	1.0
1008		60	40		1.0
1019		25		75	0.996473
1111		83		16	0.994512
1112	83		16		0.994512
1190			80	20	0.995493
1210		83	16		0.994512
1468		11		88	0.923564
1493		87		12	0.992554
1494	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain