SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1673

Length: 1322 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1673

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein, putative n=1 Tax=Ricinus communis RepID=B9RI48_RICCO	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	gtp-dependent nucleic acid-binding protein	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	84%

Source	InterPros	Term	Type	Identity
Blast2go	Conserved hypothetical protein CHP00092	IPR004396	-	84%
Blast2go	Beta-grasp domain	IPR012675	-	84%
Blast2go	TGS-like	IPR012676	-	84%
Blast2go	Domain of unknown function DUF933	IPR013029	-	84%
Blast2go	TGS-like domain	IPR023192	-	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWU7

Fln msg: your sequence is shorter than subject: 273 - 392

Fln protein: RRDLGCHSCFEDNDIIHVNGKIDPKSDIEIINLELAFSDLDQIEKRMERLKKSKPKDSQAKVKEETEMAALQQIHGALMAGKPARSVNLSDYEKEAIRHLCLLTMKPVIYVANVAESDLIEPTKNPHVKAVVEIASELSSEVVAVSAQVEAELTELQPEERIEYLKSLGVTEGGLGSLIRATYNLLGLRTYLTTGEKETKAWTIIAGMTAPQAAGVIHSDFEKGFIRAETVSYSDYVAVGSLAAAREKGLVRVEGKDYVVQEGDVMLFRFNV*

Protein Length: 274

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTTGAGGATAATGATATTATTCATGTCAATGGAAAAATTGATCCTAAATCAGACATAGAAATTATCAACTTGGAACTCGCATTTTCTGATCTTGATCAGATTGAGAAGAGAATGGAAAGGCTTAAGAAAAGCAAGCCAAAAGATTCACAGGCAAAGGTTAAGGAGGAAACAGAGATGGCTGCATTACAACAGATTCATGGGGCATTGATGGCTGGAAAACCAGCAAGATCAGTAAATTTGTCAGATTATGAAAAAGAAGCTATTCGACATCTTTGTTTGCTTACAATGAAACCTGTTATATATGTAGCCAATGTGGCTGAATCAGACCTTATTGAGCCTACTAAGAACCCTCACGTTAAAGCGGTTGTGGAAATTGCATCTGAGCTCAGCTCTGAGGTGGTGGCTGTCTCAGCACAGGTAGAAGCTGAATTGACTGAGCTCCAGCCAGAAGAGAGAATTGAATACCTAAAATCTCTTGGAGTTACTGAGGGAGGATTAGGATCTCTAATACGGGCAACATACAATCTTCTGGGTCTACGCACCTATTTAACAACTGGGGAAAAGGAGACAAAAGCATGGACAATAATTGCAGGAATGACAGCACCCCAAGCAGCTGGAGTTATTCATTCTGATTTTGAGAAGGGTTTCATACGTGCAGAGACGGTATCCTACAGTGATTATGTTGCTGTTGGCTCATTAGCTGCTGCCAGAGAGAAGGGATTGGTAAGAGTTGAAGGAAAAGATTATGTTGTACAAGAAGGAGATGTGATGCTGTTTCGATTTAATGTGTGA___TTCTGATTTTGAAGGGATGGAAATACACAATGAAACTCAATTTTGTCATTCTTTCCTTTAAACCAAGCTTCAAAACAAAGCTAATTTTGGTGGTTTCAGGGTTGATGCTAGATCATACTTTCGGATGGGGCCCTTTGAGTGTTGATTTTAGCAATCCTTGGACTTTTTTATTTATTAAAATGAGGTTGAAAGTGTATAGAGATCAGAGGACTAACAGAAATTAGTGAAAAATTGTCAGCGTCGTTTGCATTCCATTTGGAATCACTGAAGTTGTAATCTTCTTAGCTTCCATCATTAAGGAGCAGTAGTTGGACTGGGGCTTTATTCCTGATTGAATACTAAAGAGTAGTGAGTATTTGAATTAAAATGATTCCTATAACTGGTGTTTCTACAACCTAAGCTGCTTAGCTTGTATTAGCTTGTAATAAGATGACTTGAGAAAATTGATTCAGTTTCAACCCTGTTTGTTTCCACAAATAGCTCATAATCCCATGGTTGAAATA

Fln Alignment:

sp_v1.1_unigene1673___HSC--FEDNDIIHVNGKIDPKSDIEIINLELAFSDLDQIEKRMERLKKSKPKDSQAKVKEETEMAALQQIHGALMAGKPARSVNLSDYEKEAIRHLCLLTMKPVIYVANVAESDLIEPTKNPHV-KXXXXXXXXXXXXXXXXXXXXXXXLTELQPEERIEYLKSLGVTEGGLGSLIRATYNLLGLRTYLTTGEKETKAWTIIAGMTAPQAAGVIHSDFEKGFIRAETVSYSDYVAVGSLAAAREKGLVRVEGKDYVVQEGDVMLFRFNV
A9NWU7______________HVCRAFDDPDVIHVEDVVDPVRDLEVITEELRLKDLEFMERRMEDLEKSMKRSNDKQLK--IEMECCQKVKAWLEEGKDVRLGDWKAAEVEILNTFQLLSAKPVVYLVNMTEKDY-QRKKNKYLPKIHSWVQGHGGEPIIPFSGALEQKLADMPPDEAAKYCEE-NKTQSALTKIIKTGFSAINLIYFFTAGPDEVKCWQVRKQIKAPQAAGAIHTDFERGFICAEVMKVEDLKELGSESAVKAGGKYRQEGKTYVVQDGDIILFKFNV

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
901	66	33			0.997452
905	66		33		0.997452
907		33		66	0.997452
908		33		66	0.997452
915		33	66		0.997452
916	33			66	0.997452
917		33		66	0.997452
1170	80			20	0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain