SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1668

Length: 3153 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1668
CGTCGTGACCTTGGCTGTCACTCAGGAAGCGTCGTGACCTTGGCTGTCACTCATTCATTATAGAAGGATTGATGGAACAACTAGCTTAGATGATAGAGAATCGGCTATTCATGATTTTAATAAGCCTGGTTCTGAATGTTTCCTATTCTTACTTAGTATCCGTGCAGCAGGAAGGGGTTTGAATCTTCAATCAGCAGACACAGTGGTCATATATGATCCTGACCCAAACCCAAAAAATGAAGAGCAGGCTGTAGCTAGGGCTCATAGAATTGGTCAGAAGAGAGAGGTCAGAGTTATATACTTAGAAGCTGTTGTAGAAACAATATCAAGCTACCAGAAAGAAGATGAACTCAGAACTGGGGGAACAATAGATGATGAGGATGATCTTGCTGGTAAAGATCGATATATGGGTTCTGTGGAGAGCCTTGTTCGTAACAACATTCAACAGTATAAAATTGATATGGCAGATGAGGTCATAAATGCAGGTCGTTTTGATCAAAGGACAACACAAGAAGAGAGGCGTATGACATTAGAGACTCTTTTACATGATGAAGAGAGGTACCAAGAAACAGTTCATAATGTCCCTTCAATGCAGGAAGTAAATCGTTTAATTGCTAGAAGCAAAGAAGAACTGGAGCTGTTTGACCGGATGGATGAGGAGATTGACTGGCCTGGTGAGATGATGAAGCACCTACAGATTCCTAAGTGGCTACGTGTGGGCTCAAGAGAGGTCAGTGCTGCTCAAGATGCTATGTCTAAGCAGGCGTTAAGTAGGGGTTTTGTGGTACCTATTGGTACTAAAGAAGAAGAAGATAAATTATGTGCAATGCCCCCTATAACCATTCCGGAGAAGAAATCAGCCAATATAGAAAATGCTTCCAATCGAAAACCCTCTAAAGCTTCATCTAGTAACAAAAAACAGCTACCTAATAAACACAGAGGCATGCAATCTGTTGATGAAGGGGACGAGGAAATTGAAGTAAGTACGGAAGAGAAAGATGGTTCTTCTACACATGAAGAAGAGGGAGAAATAAAAGAAGATTTAGAAGATGAAGAAAACAGCAGGGCGGCTGATCTAGTGCTTAATGATAGAGTTCAGTCTGAAGAAGGTCAACTAGAATCCGATGGAGGTGAGGATGACGAAACTAGGGCCACAGAAGTTATGGAGAATGTTGTTAGAGGGGGCAATGAAGGCGAGGCTGCTTCATCAGAATCTTCATTTCGGAATGGAAAAGTGAATGTAGGACAGGTTTCTTCGCCGACGGTGTCTGCTCAAAAATTTGGATCTTTGGCTGCACTAGAAGCCAAACCTACAACCCAACCAAAGCCAGTGGTGGAAGAGCTGGAGGAAGGTGAAATTGTTGCATCTGGTGATTCTCACATGGAGTTCCAACAATCAGGAAGTTGGGTGCATGAGAGGGAAGACGGTGAAGAGGAACAAGTTTTGCAACCAAAAACCAAGCGAAAGCGCAGTATGCGCACTCGCCCTCGACCCCTTTCAGAAAAGTTAGAAGAGAAGCCTATTTCCGAAAAACAAGTGCATCACTCAATGACTTTCTACCAGCAAAATTCTAATCAGACACGTTACGATTATGGGCGACATGTGGGACCTAATAAAGATGTTGGAGCTGTCAGTGATGCAGCCTATGACAAGCCTGATCACTGGAGTGCAAATCTCAAGAGGAGAGAGGTTATTCAATCAAGAGTTGAGGATACTTTGTTAGAAACATTACCAGTGTCAAAGCAACGTGTCCTGCTTAAGCATAACAGACCGAATGGATATATTGAACCTCTTCAGGATGCTACAGAATATCCAAGAGAAAGATGGGATCCAAAATTCATTCACTCTGGTGTATCTTCAAGCTGTATTGGAGGTGGACACATCTCTGATATCACACAGAAAAAGTGTAAGAATGTTTTACTAGATTGCAAGGAACAGTCAAGGAAGGACGACACACAGCACTGGTTGTGGAGATTCCAAAAGAAATGAGAATCCAACTTACTATAGGGTTATAGAGAACCCTATAGATGCTCGAACAATAGAACAACGTCTTGACCGCTTTTTATATGGGAGTGTTCTTGACTTTGCTGCAGATGTGCAGTTGATGCTGGAGAATGCTATACGTTTTTATGGTCATTCTAATGAGGTCAAGACAAATTTAAGGAGGCTTCAAGCTCTCTTCTTCCAGCGTATGGCTGATTCCTTCCCAGATGATAATTTTAGTTCCTTTAAAACTCGAAGCTTGGTTGCTCTTGGTCAAACTGCAAATTCATCTACATCATCCCCTAAGCAACAACCGATTCAATCTAGACTGCTTAAGCCACAAGATGATTTCATTCTAGCCTCTGACTCAGGTCCAGCAAAGCACTCGCAACGGAGCTTCAATGCTGTTGATGATGATATGAGGGAGAAAGCTAGTCAGAAAGAAAACATTTCTAAGATGCCGAAAGAAGCTAGGGCCATGTTTGGTGATCGAGCACAGAACAGGGAAAGATGTAGGGGAGATGAAGTAGATGAAGTAACTCACCCTGGTGATCTTGTTATCTGCAAAAAGAAGAGGAAAGATAGGGATAAAGTAATAGCGAAAGCTAGGATGGTTAATTGCTCACCCGATATTTGTCAGGGTACAAGAAATTTGCCCCAGAAGGATATCTTGATTCCCGGGCAAACTAGACAGGTCCAAGGATGGCCTCAGTTTGCTAGTGCTGAGAAGACCGGTACTAGTGGACTTGATGCTGAGAAGGATGATGCTCAGTGGGCTAGACCAGTTAAGAGGATGAGGACAGATAAGAGGAGGCCCAGTCATATTTGATTCTGTAAATATTGAAGTCATTTATTGGGGTGTTTGCATATCCTTTTACTGGAAATCTTCACCATTGTTGCAAGTTGTAATCTTAGTGCATGTTCGGCAAAGTGCTCTTGATTTAGAGTTTCCCATTGTAAAGTATGTGTTATAGTCTTATAGAGGTTATGAAAACTAACCTATTATCATTCAATTCCTAATGTCACATTCAATGATCCCCGAGATAATGGATAACGTGTCCTTAATATTCTATAGTTGCTCAATATTTGTCTCTGATTTGTGAATCTGGCAGCCTAGTGAGAGCTGTCTCATCTGTGTTTTTTAATTAATTCTTTGCTTATTAACTATC

Ace file of the UniGene sp_v1.1_unigene1668

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chromo domain protein, putative n=1 Tax=Ricinus communis RepID=B9RDU3_RICCO	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	at2g46020-like protein	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	regulation of gene expression, epigenetic	GO:0040029	Biological Process	64%
Blast2go	organ boundary specification between lateral organs and the meristem	GO:0010199	Biological Process	64%
Blast2go	DNA binding	GO:0003677	Molecular Function	64%
Blast2go	cytosol	GO:0005829	Cellular Component	64%
Blast2go	chromatin remodeling complex	GO:0016585	Cellular Component	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD70

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is longer than subject: 663 - 377

Fln protein: VVTLAVTQEAS*PWLSLIHYRRIDGTTSLDDRESAIHDFNKPGSECFLFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVRVIYLEAVVETISSYQKEDELRTGGTIDDEDDLAGKDRYMGSVESLVRNNIQQYKIDMADEVINAGRFDQRTTQEERRMTLETLLHDEERYQETVHNVPSMQEVNRLIARSKEELELFDRMDEEIDWPGEMMKHLQIPKWLRVGSREVSAAQDAMSKQALSRGFVVPIGTKEEEDKLCAMPPITIPEKKSANIENASNRKPSKASSSNKKQLPNKHRGMQSVDEGDEEIEVSTEEKDGSSTHEEEGEIKEDLEDEENSRAADLVLNDRVQSEEGQLESDGGEDDETRATEVMENVVRGGNEGEAASSESSFRNGKVNVGQVSSPTVSAQKFGSLAALEAKPTTQPKPVVEELEEGEIVASGDSHMEFQQSGSWVHEREDGEEEQVLQPKTKRKRSMRTRPRPLSEKLEEKPISEKQVHHSMTFYQQNSNQTRYDYGRHVGPNKDVGAVSDAAYDKPDHWSANLKRREVIQSRVEDTLLETLPVSKQRVLLKHNRPNGYIEPLQDATEYPRERWDPKFIHSGVSSSCIGGGHISDITQKKCKNVLLDCKEQSRKDDTQHWLWRFQKK*

Protein Length: 664

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAAGCGTCGTGACCTTGGCTGTCACTCATTCATTATAGAAGGATTGATGGAACAACTAGCTTAGATGATAGAGAATCGGCTATTCATGATTTTAATAAGCCTGGTTCTGAATGTTTCCTATTCTTACTTAGTATCCGTGCAGCAGGAAGGGGTTTGAATCTTCAATCAGCAGACACAGTGGTCATATATGATCCTGACCCAAACCCAAAAAATGAAGAGCAGGCTGTAGCTAGGGCTCATAGAATTGGTCAGAAGAGAGAGGTCAGAGTTATATACTTAGAAGCTGTTGTAGAAACAATATCAAGCTACCAGAAAGAAGATGAACTCAGAACTGGGGGAACAATAGATGATGAGGATGATCTTGCTGGTAAAGATCGATATATGGGTTCTGTGGAGAGCCTTGTTCGTAACAACATTCAACAGTATAAAATTGATATGGCAGATGAGGTCATAAATGCAGGTCGTTTTGATCAAAGGACAACACAAGAAGAGAGGCGTATGACATTAGAGACTCTTTTACATGATGAAGAGAGGTACCAAGAAACAGTTCATAATGTCCCTTCAATGCAGGAAGTAAATCGTTTAATTGCTAGAAGCAAAGAAGAACTGGAGCTGTTTGACCGGATGGATGAGGAGATTGACTGGCCTGGTGAGATGATGAAGCACCTACAGATTCCTAAGTGGCTACGTGTGGGCTCAAGAGAGGTCAGTGCTGCTCAAGATGCTATGTCTAAGCAGGCGTTAAGTAGGGGTTTTGTGGTACCTATTGGTACTAAAGAAGAAGAAGATAAATTATGTGCAATGCCCCCTATAACCATTCCGGAGAAGAAATCAGCCAATATAGAAAATGCTTCCAATCGAAAACCCTCTAAAGCTTCATCTAGTAACAAAAAACAGCTACCTAATAAACACAGAGGCATGCAATCTGTTGATGAAGGGGACGAGGAAATTGAAGTAAGTACGGAAGAGAAAGATGGTTCTTCTACACATGAAGAAGAGGGAGAAATAAAAGAAGATTTAGAAGATGAAGAAAACAGCAGGGCGGCTGATCTAGTGCTTAATGATAGAGTTCAGTCTGAAGAAGGTCAACTAGAATCCGATGGAGGTGAGGATGACGAAACTAGGGCCACAGAAGTTATGGAGAATGTTGTTAGAGGGGGCAATGAAGGCGAGGCTGCTTCATCAGAATCTTCATTTCGGAATGGAAAAGTGAATGTAGGACAGGTTTCTTCGCCGACGGTGTCTGCTCAAAAATTTGGATCTTTGGCTGCACTAGAAGCCAAACCTACAACCCAACCAAAGCCAGTGGTGGAAGAGCTGGAGGAAGGTGAAATTGTTGCATCTGGTGATTCTCACATGGAGTTCCAACAATCAGGAAGTTGGGTGCATGAGAGGGAAGACGGTGAAGAGGAACAAGTTTTGCAACCAAAAACCAAGCGAAAGCGCAGTATGCGCACTCGCCCTCGACCCCTTTCAGAAAAGTTAGAAGAGAAGCCTATTTCCGAAAAACAAGTGCATCACTCAATGACTTTCTACCAGCAAAATTCTAATCAGACACGTTACGATTATGGGCGACATGTGGGACCTAATAAAGATGTTGGAGCTGTCAGTGATGCAGCCTATGACAAGCCTGATCACTGGAGTGCAAATCTCAAGAGGAGAGAGGTTATTCAATCAAGAGTTGAGGATACTTTGTTAGAAACATTACCAGTGTCAAAGCAACGTGTCCTGCTTAAGCATAACAGACCGAATGGATATATTGAACCTCTTCAGGATGCTACAGAATATCCAAGAGAAAGATGGGATCCAAAATTCATTCACTCTGGTGTATCTTCAAGCTGTATTGGAGGTGGACACATCTCTGATATCACACAGAAAAAGTGTAAGAATGTTTTACTAGATTGCAAGGAACAGTCAAGGAAGGACGACACACAGCACTGGTTGTGGAGATTCCAAAAGAAATGA___GAATCCAACTTACTATAGGGTTATAGAGAACCCTATAGATGCTCGAACAATAGAACAACGTCTTGACCGCTTTTTATATGGGAGTGTTCTTGACTTTGCTGCAGATGTGCAGTTGATGCTGGAGAATGCTATACGTTTTTATGGTCATTCTAATGAGGTCAAGACAAATTTAAGGAGGCTTCAAGCTCTCTTCTTCCAGCGTATGGCTGATTCCTTCCCAGATGATAATTTTAGTTCCTTTAAAACTCGAAGCTTGGTTGCTCTTGGTCAAACTGCAAATTCATCTACATCATCCCCTAAGCAACAACCGATTCAATCTAGACTGCTTAAGCCACAAGATGATTTCATTCTAGCCTCTGACTCAGGTCCAGCAAAGCACTCGCAACGGAGCTTCAATGCTGTTGATGATGATATGAGGGAGAAAGCTAGTCAGAAAGAAAACATTTCTAAGATGCCGAAAGAAGCTAGGGCCATGTTTGGTGATCGAGCACAGAACAGGGAAAGATGTAGGGGAGATGAAGTAGATGAAGTAACTCACCCTGGTGATCTTGTTATCTGCAAAAAGAAGAGGAAAGATAGGGATAAAGTAATAGCGAAAGCTAGGATGGTTAATTGCTCACCCGATATTTGTCAGGGTACAAGAAATTTGCCCCAGAAGGATATCTTGATTCCCGGGCAAACTAGACAGGTCCAAGGATGGCCTCAGTTTGCTAGTGCTGAGAAGACCGGTACTAGTGGACTTGATGCTGAGAAGGATGATGCTCAGTGGGCTAGACCAGTTAAGAGGATGAGGACAGATAAGAGGAGGCCCAGTCATATTTGATTCTGTAAATATTGAAGTCATTTATTGGGGTGTTTGCATATCCTTTTACTGGAAATCTTCACCATTGTTGCAAGTTGTAATCTTAGTGCATGTTCGGCAAAGTGCTCTTGATTTAGAGTTTCCCATTGTAAAGTATGTGTTATAGTCTTATAGAGGTTATGAAAACTAACCTATTATCATTCAATTCCTAATGTCACATTCAATGATCCCCGAGATAATGGATAACGTGTCCTTAATATTCTATAGTTGCTCAATATTTGTCTCTGATTTGTGAATCTGGCAGCCTAGTGAGAGCTGTCTCATCTGTGTTTTTTAATTAATTCTTTGCTTATTAACTATC

Fln Alignment:

sp_v1.1_unigene1668___RIDGTTSLDDRESAIHDFNKPGSECFLFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVRVIYL
D5AD70______________RIDGSVKLHDRQRQIKDFNDPNSNLHIFLLSTRAGGLGINLTAADTCIIYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRL

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
1587		16	83		0.994512
1627			14	85	0.993533
1628			14	85	0.993533
1704	25			75	0.996473
1705		75		25	0.996473
1708		25	75		0.996473
1710	25		75		0.996473
1711	25			75	0.996473
1712	25			75	0.996473
1715	25		75		0.996473
1716	25		75		0.996473
1717	75		25		0.996473
1720	25	75			0.996473
1927		80		20	0.995493
1928			20	80	0.995493
1929	80		20		0.995493
2057		50		50	1.0
2200		14		85	0.993533
2234		71		28	1.0
2508	10		90		0.90298
2560	75			8	0.99999
3037	90		10		0.90298
3061	12			87	0.992554
3063	12			87	0.992554
3070		14		85	0.993533
3072	75	25			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
801	813	AAG AAG AAG AAG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain