SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1659

Length: 2170 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1659
ATGGGGAAAGCCAAATGGGAAATTTCCGAACCTATTTTCAAAGGAAAATTGACACACCCGTGCTTTCGTTTCCAAGCCCAATTATCGTAGACGACGGGTTACACACGCTAATTCCCTCCCGACGGAATTCGTCCAATTAGAGCTGTATACATCCCACGAAAGATGCAGTGTCCAATTTCACAAATCACGGCGTCAGATGCAGAAGTATAAGAGAAAAATTTGAAAAACCACATGAAAAACACGAAGATCCGAATGAGCAGGACAGTGTCGCAATCGTGATTGGTGAGGGTATTGGGTATAATATAATAATGTGTTACTCTTGAACGAAAACAAAACAGAACTCCATATGGTAGAGAAGAAGTCGGAGAATATTTTCTGTGTGATGGTGTTGATGCCTTCGTTCGTTTCTGGCCCTTTTCCTGTCCACTTGGGAAACCCTAGGTTAGGTTGCAGAACAATGCCGTGCTCTGTCCGTCATTGACAGGGTTCGAATCCTGGACCTCTTGATTGATTTTCACTAGGGCGTCGTGGGATCGAGGCTCATTGGCAGAATTCTCCGATAATTCGTGGGAGGATCGGTTTCCTTGAACGTATCTGTTCGGAATTTGAGGGGTGATTGATGGCTGTGGATGAGTAGAGTTTTGTTATGTTTCAGGTCAACACAATTTCGATCTGACTGACGTCTTGTCTTGTCCATCGAAAAAAATGGAGGACAAGCGGAGCGTTGCGCGGGCACTTTTTGCTGTGCTGCAATGGTGGTGCTTCAATGTTGCTGTCATTATTACGAACAAGTGGATCTTTCAGAAATTGGACTTCAAATTTCCTCTGTCAGTATCATGTGTACACTTCATATGCTCAGCAGTGGGGTCATATATTGCAATTAAAGTTTTTAAGGTGAAGCCATTGATTGAAGTTGATCCAGTTGATCTCTGGAGGCGGATTTTCCCTATGTCATTTGTCTTTTGCATCAATATTGTGCTGGGGAATGTGAGCCTGCGTTACATACCTGTTTCTTTCATGCAGACAATTAAATCTTTTACTCCTGCTACAACAGTATTTCTTCAATGGCTAGTGTGGAGAAAGGCTTTTGATACGCGCATATGGTGGTCCCTGGTACCTATAGTGGGTGGCATTCTTCTTACTTCTGTTACAGAACTTAGTTTCAATATTTTTGGTTTCTGCGCAGCCTTCTTTGGGTGCCTTGCTACTTCAACAAAAACAATTCTTGCAGAGAGTTTGCTTCATGGATATAAATTTGATAGCATAAATACTGTGTTTTATATGGCACCTTTTGCGACTATGATATTGGCTGTTCCGGCTTTACTTCTCGAAGGGACTGGTGTCTTGCACTGGTTAGAAACGCATGATAATGTTTACGGCCCCTTGTTTATAATATTTGGCTCTGGCATAGTTGCCTTCTGTTTGAACTTTTCGATCTTTTATGTTATTCACTCGACAACTGCTGTTACTTTCAATGTTGCAGGGAATATGAAGGTGGCAGTTGCAATTATGGTATCATGGCTTATATTTCGCAATCCAATATCCCTCTTAAATGCAGTAGGATGTGCGATTACCCTTTTAGGTTGCACTTTCTATGGATATGTGAGACACAAGCTATCTCAAGATGTAGGAAAGTCCATCAGTGAAAGCCCACGGATGTCTGGAAAAAGGCTTGAGATTCTTCCACTTGTGACTGAGAAGATTGACAAGAATTGAGCATCTGAACCGAATTAATTAAGTTGGAGTTCTTTATAAAGCCTGCAATTCTTTTTTTAGTCATCTAGGTGCTTCAGAACTGTGTAAGTAAAGCACTAGCTTTTTTTCTTCTTCTATGGATGGCAGTCTCAAGGAGAAGATAGAATCAAACAAAATATTGCGAGTGCAGCTCCTTAGGAAAGCTCTCTACTAACAGTGAGCATCGATTAATTTATTGTTTGTGCATAAACACCTGGAAAAGATATTTTTCATTGTTAGTTGTTTCCAATGTAGCATTGTTGCTCATTCATTAGACATATCAGTTGATTCTGACATAGAATGCAGAGATTTTAATAAAATCATTGAGTTAGCTAATTTCCTCAGCATATTCCTGTGCTCGTAGAGTGCTTTGGAATACTTTGTCACTGTAGTCTTGGAAGTCTACTGTGTACAGGATGCAGGTGAGGATTTGATA

Ace file of the UniGene sp_v1.1_unigene1659

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glucose-6-phosphate/phosphate translocator-related	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	protein	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleotide-sugar transport	GO:0015780	Biological Process	0.0	86%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Drug/metabolite transporter	IPR000620	-	0.0	86%
Blast2go	Domain of unknown function DUF250	IPR004853	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAV3

Fln msg:

Fln protein: MEDKRSVARALFAVLQWWCFNVAVIITNKWIFQKLDFKFPLSVSCVHFICSAVGSYIAIKVFKVKPLIEVDPVDLWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVFLQWLVWRKAFDTRIWWSLVPIVGGILLTSVTELSFNIFGFCAAFFGCLATSTKTILAESLLHGYKFDSINTVFYMAPFATMILAVPALLLEGTGVLHWLETHDNVYGPLFIIFGSGIVAFCLNFSIFYVIHSTTAVTFNVAGNMKVAVAIMVSWLIFRNPISLLNAVGCAITLLGCTFYGYVRHKLSQDVGKSISESPRMSGKRLEILPLVTEKIDKN*

Protein Length: 338

Fln nts: ATGGGGAAAGCCAAATGGGAAATTTCCGAACCTATTTTCAAAGGAAAATTGACACACCCGTGCTTTCGTTTCCAAGCCCAATTATCGTAGACGACGGGTTACACACGCTAATTCCCTCCCGACGGAATTCGTCCAATTAGAGCTGTATACATCCCACGAAAGATGCAGTGTCCAATTTCACAAATCACGGCGTCAGATGCAGAAGTATAAGAGAAAAATTTGAAAAACCACATGAAAAACACGAAGATCCGAATGAGCAGGACAGTGTCGCAATCGTGATTGGTGAGGGTATTGGGTATAATATAATAATGTGTTACTCTTGAACGAAAACAAAACAGAACTCCATATGGTAGAGAAGAAGTCGGAGAATATTTTCTGTGTGATGGTGTTGATGCCTTCGTTCGTTTCTGGCCCTTTTCCTGTCCACTTGGGAAACCCTAGGTTAGGTTGCAGAACAATGCCGTGCTCTGTCCGTCATTGACAGGGTTCGAATCCTGGACCTCTTGATTGATTTTCACTAGGGCGTCGTGGGATCGAGGCTCATTGGCAGAATTCTCCGATAATTCGTGGGAGGATCGGTTTCCTTGAACGTATCTGTTCGGAATTTGAGGGGTGATTGATGGCTGTGGATGAGTAGAGTTTTGTTATGTTTCAGGTCAACACAATTTCGATCTGACTGACGTCTTGTCTTGTCCATCGAAAAAA_-_ATGGAGGACAAGCGGAGCGTTGCGCGGGCACTTTTTGCTGTGCTGCAATGGTGGTGCTTCAATGTTGCTGTCATTATTACGAACAAGTGGATCTTTCAGAAATTGGACTTCAAATTTCCTCTGTCAGTATCATGTGTACACTTCATATGCTCAGCAGTGGGGTCATATATTGCAATTAAAGTTTTTAAGGTGAAGCCATTGATTGAAGTTGATCCAGTTGATCTCTGGAGGCGGATTTTCCCTATGTCATTTGTCTTTTGCATCAATATTGTGCTGGGGAATGTGAGCCTGCGTTACATACCTGTTTCTTTCATGCAGACAATTAAATCTTTTACTCCTGCTACAACAGTATTTCTTCAATGGCTAGTGTGGAGAAAGGCTTTTGATACGCGCATATGGTGGTCCCTGGTACCTATAGTGGGTGGCATTCTTCTTACTTCTGTTACAGAACTTAGTTTCAATATTTTTGGTTTCTGCGCAGCCTTCTTTGGGTGCCTTGCTACTTCAACAAAAACAATTCTTGCAGAGAGTTTGCTTCATGGATATAAATTTGATAGCATAAATACTGTGTTTTATATGGCACCTTTTGCGACTATGATATTGGCTGTTCCGGCTTTACTTCTCGAAGGGACTGGTGTCTTGCACTGGTTAGAAACGCATGATAATGTTTACGGCCCCTTGTTTATAATATTTGGCTCTGGCATAGTTGCCTTCTGTTTGAACTTTTCGATCTTTTATGTTATTCACTCGACAACTGCTGTTACTTTCAATGTTGCAGGGAATATGAAGGTGGCAGTTGCAATTATGGTATCATGGCTTATATTTCGCAATCCAATATCCCTCTTAAATGCAGTAGGATGTGCGATTACCCTTTTAGGTTGCACTTTCTATGGATATGTGAGACACAAGCTATCTCAAGATGTAGGAAAGTCCATCAGTGAAAGCCCACGGATGTCTGGAAAAAGGCTTGAGATTCTTCCACTTGTGACTGAGAAGATTGACAAGAATTGA___GCATCTGAACCGAATTAATTAAGTTGGAGTTCTTTATAAAGCCTGCAATTCTTTTTTTAGTCATCTAGGTGCTTCAGAACTGTGTAAGTAAAGCACTAGCTTTTTTTCTTCTTCTATGGATGGCAGTCTCAAGGAGAAGATAGAATCAAACAAAATATTGCGAGTGCAGCTCCTTAGGAAAGCTCTCTACTAACAGTGAGCATCGATTAATTTATTGTTTGTGCATAAACACCTGGAAAAGATATTTTTCATTGTTAGTTGTTTCCAATGTAGCATTGTTGCTCATTCATTAGACATATCAGTTGATTCTGACATAGAATGCAGAGATTTTAATAAAATCATTGAGTTAGCTAATTTCCTCAGCATATTCCTGTGCTCGTAGAGTGCTTTGGAATACTTTGTCACTGTAGTCTTGGAAGTCTACTGTGTACAGGATGCAGGTGAGGATTTGATA

Fln Alignment:

sp_v1.1_unigene1659___WWCFNVAVIITNKWIFQKLDFKFPLSVSCVHFICSAVGSYIAIKVFKVKPLIEVDPVDLWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVFLQWLVWRKAFDTRIWWSLVPIVGGILLTSVTELSFNIXXXXXXXXXXLATSTKTILAESLL--HGYKFDSINTVFYMAPFATMILAVPALLLEGT--GVLHWLETHDNVYGPLFIIFGSGIVAFCLNFSIFYVIHSTTAVTFNVAGNMKVAVAIMVSWLIFRNPISLLNAVGCAITLLGCTFYGYVRHK
D5AAV3______________WFSSNIGVILLNKYLLSNYGFRFPLFLTMCHMTACSLLSYLVIVWFKMVPMQPIRSRVQFTKIATLSAIFCASVVGGNISLRYLPVSFNQAVGATTPFFTAVLAYLITVQREAWLTYFTLVPVVAGVIIASGGEPSFHLYGFIMCISATAARALKTVLQGILLSSEGEKLNSMNLLLYMAPIAVLLLLPATLIMEPNVLGMTIALARQD-VKIVYYLVFNS-TLAYFVNLTNFLVTKYTSALTLQVLGNAKGAVAVVVSIMLFRNPVSVTGMLGYTLTVCGVILYSEAKRR

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
359	85		14		0.993533
374		50		50	1.0
486	10		90		0.90298
488			10	90	0.90298
489		90	10		0.90298
561			10	90	0.90298
656	18		81		0.999994
674	18			81	0.999994
676	90		10		0.90298
678		10		90	0.90298
920		87	12		0.992554
921	87			12	0.992554
922		12	87		0.992554
923			12	87	0.992554
927		12		87	0.992554
934	87			12	0.992554
936			87	12	0.992554
938		12	87		0.992554
939			87	12	0.992554
940	87	12			0.992554
941	12			87	0.992554
963		12		87	0.992554
981		20	80		0.999996
983			80	20	0.999996
986	80	20			0.999996
987		20		80	0.999996
988			80	20	0.999996
998	20		80		0.999996
999		20		80	0.999996
1001	80	20			0.999996
1002	22	77			0.999999
1008	11			88	0.923564
1009			88	11	0.923564
1011		11		88	0.923564
1012			11	88	0.923564
1014	11			88	0.923564
1015			11	88	0.923564
1017		88	11		0.923564
1024	88		11		0.923564
1026	87	12			0.992554
1061			10	90	0.90298
1065	90		10		0.90298
1068		10	90		0.90298
1071	90			10	0.90298
1073			10	90	0.90298
1074		10	90		0.90298
1077		10	90		0.90298
1079		10	90		0.90298
1080	90			10	0.90298
1081	90	10			0.90298
1082	90		10		0.90298
1272	12			87	0.999964
1817			8	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain