SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1649

Length: 1256 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1649

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	unknown [Picea sitchensis]	-	-	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTS7

Fln msg:

Fln protein: MELGSKVIVFCKERHGAGLRLAHALRQSPSSSWKRTELPLELPLDSYGLVDVAASGQIVNFVDSEGSPQVSLILLQNYKAPTSACVAYEVLKFINSKASAQSSFTVIFPSFTVIPKSLQNLRYLQLEDMEQSLYAAEINEGSDFSKAVTRGLKRLPPTTHISDDLVASFLHFVHVLKVSAVLLVAPTTPNSRLDSKGTRMQQVEDSQMLCKLGDLLASHMELIFSKELLDNQNTPIEIEKNVEDDWRRLYG*

Protein Length: 253

Fln nts: TCACTGTCGTCGTGACCTTGGCTGTCACATCAACGCCTTCATTAAAGTTCATTCTCTGCTTCTTCACATCAGGATTTATATGTGTTTTCTCTCAGAGAGATCCAGAATTTTCAA_-_ATGGAATTAGGAAGCAAGGTGATTGTATTCTGCAAAGAGAGGCACGGTGCAGGCTTAAGGCTTGCACATGCCCTTCGCCAGAGCCCTTCTTCATCATGGAAAAGAACAGAACTACCTCTCGAGCTGCCACTGGACAGCTATGGACTGGTAGATGTTGCTGCATCTGGTCAAATTGTAAACTTTGTGGATTCAGAAGGCTCCCCGCAGGTGTCCTTGATACTCCTTCAAAACTACAAAGCTCCTACTAGTGCTTGCGTAGCCTACGAAGTTCTGAAGTTCATCAATTCAAAAGCTTCCGCGCAATCGTCTTTCACAGTCATATTTCCTTCTTTTACAGTAATTCCAAAATCCTTGCAAAATCTAAGATATCTACAGCTTGAAGACATGGAGCAGTCTCTATATGCAGCTGAAATCAATGAAGGGTCTGATTTTTCAAAGGCTGTCACAAGGGGTCTTAAAAGGCTGCCACCAACGACACACATATCTGATGATCTCGTGGCTTCCTTTCTGCATTTTGTTCACGTTTTGAAGGTGTCTGCAGTGCTGCTGGTAGCTCCAACTACCCCAAACAGCCGTTTAGACAGCAAAGGAACCAGAATGCAACAAGTGGAAGACTCGCAGATGCTTTGCAAGCTTGGCGATCTTTTGGCAAGTCACATGGAACTTATATTCTCAAAAGAGTTACTGGACAATCAAAATACTCCCATTGAGATTGAGAAAAATGTAGAAGATGACTGGCGTAGATTGTATGGATGA___CACTTTATCTTCATTCCTGTTAAGAATTTTGTTTTGTATAATGTAACCTTTAAAAGTTTAGACTGAAAATGCTTAAATTGATGTTATGTTTTATCAAACATTACAAAAATTCAAATTCTTGATCTGGAACAAAACATGCAATATCTTGCTGGAAATTATGTTTCAGTGAATAGGAAAGCTGTTTGTTGTACGGTAACATACAGATTATGTTCTATTGCTGAAAAGTATAGAATTTGGAAACGGGCCACAAATCAAGTGTGATTTTATTGATAGTGGCTTCAATCTGTGATAAATATCCGATATTTTCCCGTTGTTAGCACTCACTACTACACTACGCTGATAGTGTTTTAACAATGCAGCTGAAAAGCTGATCTGGTTGACATTAC

Fln Alignment:

sp_v1.1_unigene1649___MELGSKVIVFCKERHGAGLRLAHALRQSPSSSWKRTELPLELPLDSYGLVDVAASGQIVNFVDSEGSPQVSLILLQNYKAPTSACVAYEVLKFINSKASAQS-SFTVIFPSFTVIPKSLQNLRYLQLEDMEQSLYAAEINEGSDFSKAVTRGLKRLPPTTHISDDLVASFLHFVHVLKVSAVLLVAPTTPNSRLDSKGTRMQQVEDSQMLCKLGDLLASHMELIFSKELLDNQNTPIEIEKNVEDDWRRLYG
A9NTS7______________MELGSKVIVSCKDRHGAGLRLAHALRQSPSTSWKRTELPLDLPLDSYGLVDVALSGQIVNFVDSEGSPQVSLILLQNYKAPTSACVAYEVLKFIKTKASTQSLSFTVIFPSFTVIPKSLQNLRCLQLEDMEQSLYAAEINEGSDFSKAITRGLKRLPPTTHISDDLLASFLHFVHVLKVPAVLLLAPITQNSRLDSKGTKMQQVEDSQMLCKLGDLLASHMELIFSKELLENQNTPIEIEKNVEDDWRRLYG

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
70		66	33		0.997452
71	66		33		0.997452
72			33	66	0.997452
73		66	33		0.997452
105		87	12		0.992554
106		62	12	25	1.0
107	87		12		0.992554
237		62	37		1.0
240		37	62		1.0
306	11			88	0.923564
308		88	11		0.923564
309	88		11		0.923564
372		80		20	0.995493
488	75		25		0.996473
581		75	25		0.996473
598		20		80	0.995493
616	80		20		0.995493
713	80	20			0.995493
749			16	83	0.994512
801	80		20		0.995493
886			12	87	0.992554
889	87		12		0.992554
891			12	87	0.992554
892	12	87			0.992554
895		12	87		0.992554
899	87		12		0.992554
902	87	12			0.992554
903	87			12	0.992554
904			12	87	0.992554
906		12		87	0.992554
907	12			87	0.992554
908		12	87		0.992554
910	12			87	0.992554
1083		33		66	1.0
1142			33	66	1.0
1187	33		66		1.0
1244	75		25		0.996473
1246		75		25	0.996473
1251		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain