SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1645

Length: 1190 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1645

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ZIP transporter	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	zip transporter	-	-	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	0.0	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLV2

Fln msg:

Fln protein: MAQCHEIIESRCRDSHGASDLKLFAMAAVLVTSAGGVYLPVLFARYSRGLKFYGTLLVLVKCFAAGVILSTGFVHVMPEAFRALESDCLPDRPWHHFPFAGLVAMAGAILTLLVDILAAKHGESRPYVPLKSSEAAEDSAKCKDIEIGGHATVFPVDCDSVIGQHSGAARAGSDLGIESGKSAMIPEENLEELESEGQKLVSKVLEIGIIFHSIIIGITLGMSENRCTIRPLVGALSFHQFFEGIGLGGCLAQAGLGTRVTAVMCLFSVTTPLGIATGMAMKSIMGFSHSRPEAVIIVEGLLGSASSGILVYMALVDLIAVEFLNTQKMKANPRLMAAAYSLLIVGAGSMALLALWA*

Protein Length: 359

Fln nts: CAGAAGGCCAGAATGAAATTTCATTCGGCCTTCTGGACTTGACCCCACAGATTCTCAACAGAATTGGGAAAGTTTTGTAAATATTGAAG_-_ATGGCTCAGTGCCATGAAATCATAGAAAGTCGTTGCAGAGACAGCCATGGCGCATCAGATCTGAAGCTGTTTGCCATGGCCGCGGTTCTGGTGACAAGCGCCGGAGGAGTATATTTGCCGGTTCTGTTTGCCAGATATTCCCGAGGCCTCAAATTTTACGGCACTCTTCTGGTACTGGTGAAATGTTTCGCTGCCGGAGTGATTCTGTCCACAGGATTTGTCCACGTCATGCCGGAAGCCTTCCGCGCTCTGGAAAGCGACTGCCTGCCGGATCGTCCATGGCACCACTTCCCGTTCGCCGGACTCGTGGCCATGGCCGGGGCAATCCTCACTCTTCTGGTAGATATTTTGGCCGCCAAACATGGCGAATCCAGGCCATATGTGCCACTAAAGTCCTCGGAAGCGGCAGAGGACTCTGCTAAATGTAAAGACATTGAGATCGGCGGTCATGCTACAGTTTTTCCGGTGGACTGTGACAGTGTAATCGGCCAACATAGCGGTGCTGCTCGCGCTGGTTCCGACTTGGGGATCGAAAGTGGTAAGAGCGCGATGATCCCGGAGGAGAATCTGGAGGAATTGGAGAGTGAGGGGCAGAAATTAGTATCCAAGGTTTTGGAGATTGGGATTATTTTTCATTCAATTATTATTGGGATCACTTTGGGGATGTCCGAGAATCGCTGCACTATAAGGCCCCTTGTCGGGGCTCTCTCCTTCCACCAGTTCTTCGAAGGGATAGGACTTGGCGGTTGCCTCGCCCAAGCAGGTTTGGGGACTCGAGTGACAGCGGTGATGTGTTTGTTTTCAGTGACGACGCCCCTGGGAATCGCCACAGGTATGGCAATGAAGTCCATAATGGGGTTCAGCCATAGCAGGCCGGAGGCTGTTATCATTGTTGAAGGATTGCTAGGCTCTGCATCATCCGGAATACTTGTGTATATGGCACTCGTAGATCTCATTGCTGTTGAATTTCTCAACACCCAGAAGATGAAAGCCAATCCAAGGCTCATGGCTGCTGCCTATTCTTTGCTCATTGTTGGAGCAGGATCCATGGCTCTTCTTGCTCTGTGGGCTTAG___ATGCATATGAATTTATTAAAAATGGGT

Fln Alignment:

sp_v1.1_unigene1645___MAQCHEIIESRCRDSHGASDLKLFAMAAVLVTSAGGVYLPVLFARYSRGLKFYGTLLVLVKCFAAGVILSTGFVHVMPEAFRALESDCLPDRPWHHFPFAGLVAMAGAILTLLVDILAAKHGESRPYVPLKSSEAAEDSAKCKDIEIGGHATVFPVDCDSVIGQHSGAARAGSDLGIESGKSAMIPXXXXXXXXXXGQKLVSKVLEXXXXXXXXXXXXTLGMSENRCTIRPLVGALSFHQFFEXXXXXXXXXXXXXXTRVTAVM-CLFSVTTPLGIATGMAMKSIMGFSHSRPEAVIIVEGLLGSASSGILVYMALVDLIAVEFLNTQKMKANPRLMAAAYSLLIVGAGS
A9NLV2______________MVLCHEIAESRCRDSHGASDLKLFAMAAVLVTSAGGVCLPVLFSRYSRGLKFYGTLLILVKCFAAGVILSTGFVHVMPEAFRALESDCLPARPWRQFPFAGFVAMAAAILTLLVDVLAAKHGETRPYVPLKSSEAVEDSAKCRDVEMGSPATVFPVESYRVIGQDSCAARAGSHSGIESAKSMMTQEENSEELGDQRQKLVSKVLEIGIIFHSIIIGITLGISENRCTITPLVGALAFHQFFEGMGLGGCLAQANLGTRVTALMCCLFSVTTPVGIATGMTVKSIMGFNESRPEAVIIAEGLLGSASSGILVYMALVDLIAVEFLNTEKMKANPGLMAAAYCLLILGAGS

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
580	83			16	0.994512
581	83			16	0.994512
583	83		16		0.994512
584		16		83	0.994512
587		83		16	0.994512
593	16			83	0.994512
595		83	16		0.994512
596		16		83	0.994512
612			20	80	0.995493
614			80	20	0.995493
665	75		25		0.996473
667		25		75	0.996473
669			75	25	0.996473
725			33	66	1.0
729		33		66	1.0
792	16	83			0.994512
822	87	12			0.992554
823			87	12	0.992554
824		12	87		0.992554
825	12		87		0.992554
972		7	92		0.999664
973			92	7	0.999664
1156		30	69		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain