SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1626

Length: 998 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1626

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_46.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7UCP6_VITVI	-	-	49%
FL-Next	sp=Beclin-1-like protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	41%
Blast2go	beclin 1 protein	-	-	58%

Source	GOs	Term	Type	Identity
Blast2go	protein targeting to vacuole	GO:0006623	Biological Process	58%
Blast2go	pollen germination	GO:0009846	Biological Process	58%
Blast2go	autophagic vacuole assembly	GO:0000045	Biological Process	58%
Blast2go	pre-autophagosomal structure	GO:0000407	Cellular Component	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Autophagy-related protein 6	IPR007243	-	0.0	58%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9M367

Fln msg: Overlapping hits, possible frame ERROR between 920 and 914, Distance to subject end: 308 aas, your sequence is shorter than subject: 244 - 517

Fln protein: MKDEGEKARGVFIDPSIPRWLCQSCRHPLSIIGAESYAEKFGAEPSRSGGQALSIHGAGSVLGASRMDHSFVVLPKQRNQTPGFPPRPRTGGNQYPGSPPVTNLNQPVHHAVGSFDKAPPGQATNNGSDSHGGKAMDESFVVLPSAAASMYRYENSPEGGGLLSPNFVGNSSSALHINNASFSSSITVLKRAFDIVSSQTQVEQPLCLECMRVVSxxxxREFEDINRDIKAYEACLERLEEESP

Protein Length: 245

Fln nts: ATGGGGGCTTTGTTCCCAAGTCGACATTCCTTTTCTCTTTTATTTTTTCACATTTTTTTGCCACACTCCAATCAAATGTTAGAAAACAGCACGTTTCCGAACTTATCGGATAAAATCTAATGTGAACTCCAAGTAACCTGAGTATCaCAGTCCACCTTGACAATTTATTGTTCATCTTCGCTATCTCCATATGTTCCTGTTCTAAATTTCATGCTTGCTGTAAGTCGTGTGCCTCCGCCATTCGAATTGACGACCTTCCCGGCAAA_-_ATGAAAGACGAAGGAGAAAAAGCCAGAGGTGTTTTCATCGATCCGAGCATCCCGAGATGGCTCTGCCAGAGTTGTCGACACCCTCTCTCCATCATCGGGGCAGAATCCTACGCAGAAAAGTTTGGAGCAGAGCCCTCAAGATCAGGGGGGCAGGCTTTGTCGATTCACGGGGCCGGGAGTGTATTGGGAGCCAGTCGAATGGACCATTCCTTTGTTGTTTTGCCCAAGCAGAGGAATCAGACACCTGGGTTTCCTCCTCGTCCTCGAACGGGTGGAAATCAGTACCCTGGCTCTCCTCCAGTGACCAATCTGAATCAGCCTGTTCATCATGCGGTGGGTTCTTTTGATAAAGCCCCGCCCGGACAAGCTACTAATAATGGATCTGACAGCCATGGTGGGAAGGCGATGGATGAATCATTTGTGGTGTTGCCATCTGCAGCTGCTTCGATGTATAGATATGAAAATTCGCCTGAAGGAGGTGGTCTGCTCTCTCCGAATTTTGTTGGGAATTCCAGCAGTGCACTGCACATTAACAATGCTAGTTTCAGTTCCAGTATAACTGTTTTGAAGCGGGCCTTTGATATCGTTTCTTCACAAACACAGGTTGAGCAGCCTTTATGCTTGGAATGCATGCGGGTCGTGTCTxxxxxxxxxxxxCGAGAGTTTGAAGATATTAATAGGGACATTAAGGCTTATGAAGCATGTCTTGAACGCCTTGAAGAGGAGTCCCCCA

Fln Alignment:

sp_v1.1_unigene1626___EKARGVFIDPSIPRWLCQSCRHPLSIIGAESYAEKFGAEPSRSGGQALSIHGAGSVLGASRMDHSFVVLPKQRNQXXXXXXXXXXXXNQYPGSPPVTNLNQPVHHAVGSFDKAPPGQATNNGSDSHGGKAMDESFVVLPSAAASMYRYENSPEGGGLLSPNFVGNSSSALHINNASFSSSITVLKRAFDIVSSQTQVEQPLCLECMRVVSExxDREFEDINRDIKAYEACLERLEEES
Q9M367______________DKSRTIPIDPNLPKWVCQNCHHSLTIVGVDSYAGKFFNDPPPSATQGSSIHGANSVLGSTRMDNSFVVLPRHK-------------PPQSQGIPP-----------------RPRGASSPQPDATQSGKAMEESFVV-------VYKSEPVSDSGGSHNLSLEVGQNGPLHSNTSGFNATINVLTRAFDIARTQTQVEQPLCLECMRVLSDxxEKEVEDVTRDVEAYEACVQRLEGET

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
79			25	75	0.996473
80			25	75	0.996473
147	25	75			0.996473
340		50		50	1.0
345	50			50	1.0
346		50	50		1.0
350		50		50	1.0
356		50	50		1.0
359	50	50			1.0
360	50	50			1.0
371	75		25		0.996473
417	20		80		0.995493
418			80	20	0.995493
420		80	20		0.995493
421	80		20		0.995493
443		80		20	0.995493
488		20		80	0.995493
499	80		20		0.995493
767		10		90	0.90298
770		10		90	0.90298
772		10		90	0.90298
773	11			77	0.968132
775			88	11	0.923564
778	88		11		0.923564
780			11	88	0.923564
781	11	88			0.923564
786	88	11			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain