SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1620

Length: 1173 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene1620 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC:5.3.1.16); K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]	-	-	70%
FL-Next	sp=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	69%
Blast2go	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	1-(5-phosphoribosyl)-5-	EC:5.3.1.16	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	Histidine metabolism	00340	84%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	84%
Blast2go	Biosynthesis of plant hormones	01070	84%
Blast2go	Metabolic pathways	01100	84%
Blast2go	Biosynthesis of secondary metabolites	01110	84%

Source	ECs	Term	Type	e value	Identity
AutoFact	1-(5-phosphoribosyl)-5-	EC:5.3.1.16	-	0.0	70%

Source	KEGGs	Term	Identity
AutoFact	Histidine metabolism	00340	70%
AutoFact	Biosynthesis of alkaloids derived from histidine and purine	01065	70%
AutoFact	Biosynthesis of plant hormones	01070	70%
AutoFact	Metabolic pathways	01100	70%
AutoFact	Biosynthesis of secondary metabolites	01110	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	histidine biosynthetic process	GO:0000105	Biological Process	0.0	84%
Blast2go	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	GO:0003949	Molecular Function	0.0	84%

Source	InterPros	Term	Type	Identity
Blast2go	Histidine biosynthesis	IPR006062	-	84%
Blast2go	Ribulose-phosphate binding barrel	IPR011060	-	84%
Blast2go	Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic	IPR011858	-	84%
Blast2go	Aldolase-type TIM barrel	IPR013785	-	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O82782

Fln msg: your sequence is shorter than subject: 247 - 304

Fln protein: QIVGSTLHDLNGESSMLITNFESEKSPAEFANLYKTDGLLGGHVIMLGADAASISAAVEALRAYPGGLQVGGGVNPDNACKYLDSGASHVIVTSYVFNDGKMDIERLKDLVRVVGKAKLVLDLSCRKKDGKYIIVTDRWQKFSDIALNEKTLDTLSIYADEYLVHGVDVEGKRLGIDEELVSLLGRCSPIPVTYAGGATTLADLDSIREAGAGSVDATVGSALDIFGGNLPYEEVIAWHQKQQIGA*

Protein Length: 248

Fln nts: CAAATTGTTGGATCCACATTACATGATTTAAATGGAGAGAGCTCAATGTTGATTACTAATTTCGAATCTGAAAAGTCACCTGCTGAATTTGCAAACTTGTACAAGACGGATGGGCTTTTAGGCGGTCATGTAATAATGCTTGGTGCAGATGCTGCAAGCATATCTGCAGCTGTTGAAGCTTTGCGTGCATATCCAGGAGGTCTACAAGTTGGAGGTGGGGTTAATCCAGACAATGCTTGCAAATACCTGGATTCTGGAGCAAGTCATGTGATAGTTACCTCTTATGTATTTAATGATGGTAAAATGGACATAGAAAGACTCAAGGATTTGGTGCGAGTTGTTGGGAAGGCAAAGCTGGTTTTGGATCTTAGTTGTAGAAAAAAGGACGGAAAGTATATTATTGTGACAGATAGATGGCAGAAGTTCAGTGACATAGCACTAAATGAGAAGACATTAGATACTCTTTCAATATATGCTGATGAATACTTAGTACATGGCGTTGATGTTGAAGGAAAACGGCTAGGAATTGATGAGGAACTTGTCAGTCTTCTTGGCAGGTGTTCCCCTATTCCGGTTACATATGCTGGTGGTGCAACAACTCTTGCAGACCTGGATAGTATTAGAGAAGCTGGTGCTGGATCTGTTGATGCAACAGTGGGTAGTGCTCTTGATATATTTGGCGGGAACTTGCCTTATGAGGAGGTTATTGCATGGCATCAAAAGCAGCAGATTGGTGCTTAG___GAGCTAACTTCAACTCCAGTATAGAACTTCCTGAGAATAGAATTTTCGGAAACTGAAAACTAGAGGGTTTGAGCTAATGTATTTTCTTAATTTAAAATGCTTTAAATTTATAATGTCAGCAAGTCTATGAGGGAAATTTCTTAGCAATTTCAATCCTTGGGGTACATTTTATTATTGACCTAGGGTATTATCATTAGCAGTTTCAATGCATATTTCCCTATTGATATTGATATGGTTGTTTGTGTGCATGACTTAGAGGTAAAAAGTTGTGTTAATATCCGTGAGATGTCTGGGTTTATAAAACCTTTATAATGACTAAATTCTTTTAACAATATACAACATTGAACATTGTCATTGATAATAATTTTTCAGTGGATAACTTTACAAATTCCATTGCACCTATGGTACTAAGGAACACTTATAAAGCTTTTA

Fln Alignment:

sp_v1.1_unigene1620___QIVGSTLHDLNGESSMLITNFESEKSPAEFANLYKTDGLLGGHVIMLGXXXXXXXXXXXXXXAYPGGLQVGGGVNPDNACKYLDSGASHVIVTSYVFNDGKMDIERLKDLVRVVGKAKLVLDLSCRKKDGKYIIVTDRWQKFSDIALNEKTLDTLSIYADEYLVHGVDVEGKRLGIDEELVSLLGRCSPIPVTYAGGATTLADLDSIREAGAGSVDATVGSALDIFGGNLPYEEVIAWHQKQ
O82782______________QIVGSTLRDLKEDGSVLVTNFESDKSAEEYAKMYKEDGLTGGHVIMLGADPLSQAAAIGALHAYPGGLQVGGGINSENCMSYIEEGASHVIVTSYVFNNGKIDLERLKDIVSIVGKQRLILDLSCRKKDGRYAIVTDRWQKFSDVILDEKSLEFLGGFSDEFLVHGVDVEGKKLGIDEELVALLGNYSPIPVTYAGGVTVMDDVERIKDAGKGRVDVTVGSALDIFGGNLPYKDVVAWHHKQ

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
914	10		90		0.90298
979	22			77	0.999999
1039			10	90	0.90298
1042			10	90	0.90298
1044		90	10		0.90298
1047		10		90	0.90298
1048		10	90		0.90298
1050	10	90			0.90298
1053		90		10	0.90298
1057	90		10		0.90298
1061		88		11	0.923564
1063	11	88			0.923564
1064	88	11			0.923564
1065			11	88	0.923564
1066	11	88			0.923564
1151	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain