SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1618

Length: 2771 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1618
AGTAACAATGGGACTTCCAGCTGTTGAAGATGGTATTTTCAATGATAATTGGCGCATTCGTCAGAGCTCTGTAGAACTTTTGGGTGATCTTCTTTTTAAGGTTGCAGGAACATCTGGAAAAGCAATTCTGGAGGGTGGAAGTGATGATGAAGGCGCAAGCACTGAAGCTCAGGGTCGTGCTATTATTGATGTTCTTGGAAAAGAAAAGCGTAATGAAGTTCTTGCAGCAGTTTATATGGTTCGATCTGATGTGAGCTTGACAGTGCGACAGGCTGCATTGCATGTTTGGAAGACTGTTGTTGCCAATACTCCTAAGACACTTAAGGAAATTATGCCAGTTTTAATGAATACCCTTATTACTTCATTGGCTTCAGCTTCATCAGAAAGACGACAGGTCGCAGGTAGGGCTCTTGGAGAGCTTGTTCGGAAACTGGGAGAAAGGGTGTTACCATCAATTATTCCAATATTGGCTCAGGGGCTGCAAGACTCAAATGGTAGTAGAAGACAAGGTGTATGCATTGGATTGAGTGAAGTGATGGCTAGTGCTGGAAAGCATCAACTTGTGACATTCATGGGTGATCTTATACCTACTATTCGAACAGCTCTTTGTGACAGTGTTTCAGAAGTGCGTGAAGCTGCGGGCCTGGCCTTCAGCACTCTGTACAAGAGTGCAGGAATGCAAGCAATAGATGAAATTGTTCCGACCCTTTTGCATGCTTTAGAAGATGAAGAAACTTCTGCCACTGCTCTGGATGGTCTGAAGCAAATACTTAGTGTCAGGACTGCAGCAGTTCTTCCACATATTTTACCAAAGCTGGTGCATCCGCCTCTGTCTGCCTTCAATGCTCATGCTCTTGGTGCATTAGCAGATGTTGCTGGGCCTGGTCTTGATTCTCATCTTGGAACTGTTTTACCACCTCTAATAGAAGCTATGGGTAATGATGATCAGGAGGTGGCAACTTTGGCTAAGAAAGCAGCAGAAACTGTTGTTATGGTTATTGATGAAGAAGGTCTTTACTCTTTGATAGCAGAGCTTGTAAAAAGCTTGGGAGACACTCAGGCTTCTGTTAGAAGGGGCTCTGCATACTTGTCAGGTTTTTTCTTTAAGAATAGTAAACTTGACTTACTTGATGAATCTCCGAACCTGGTGACAACACTGATTGTTATGTTGACAGATCCAGATTCTGCAACCGTTCAGTCTTCATGGGAGGCATTAGGATGTGTAATTGGTTCACTACCTAAAGAAATTCTTCCAACATATGTTAAAGTAGTCCGTGATGCAGTTTCAACAGCAAGAGATAAGGAACGGAGAAAGAGAAAAGGTGGACCTATACTAATTCCTGGTTTTTGTCTCCCCAAAGCTCTTCAGCCTGTTCTTCCTGTCTTTCTCCAAGGTCTGATGAGTGGTTCAGCTGAATTGAGAGAACAAGCAGCCGAAGGGCTAGGGGAGCTAATAGATGTGACCAGTGAAAATGCATTGAAGCCTTTTGTTGTTCCGATAACTGGGCCTCTTATACGAATAATAGGAGACAGGTTTCCATGGCAGGTCAAAAGTGCCATTTTATCTACTTTGGGTATCCTAATAAGCAAGGGTGGAATATCCCTCAAGCCTTTTCTTCCACAGCTTCAAACAACTTTTATCAAGTGCTTGCAGGACAATACAAGGGTTGTGCGTTCAAGTTCAGCACTGGCACTGGGGAAGCTTAGTGCTCTAAGCACCCGGGTTGATCCTTTAGTTAATGATCTCCTTTCAAATTTGCAGGTGGCATCTGAGGGTGGAGTTAAAGAGGCTATTCTGGTTGCTCTTCAGGGAGTCTTGAAGTATGCTGGAAAAAGTGTCACTGCTTCTGTAATAAGTCGTGTCCTCGTTGTGCTCCAGGATCTTGTACAATCTGATGATGATCAAATCAGGTGTTCAGCTGCAAGAGCAATGGGTATAGTTTCCCAGTATGTGGAAGATACAGAACTTGCTAGCTTATTGCACGCACTGTCAGTCCCAGCGTCATCGGAGTCTCTGGCTGTTCGGCATGGAACAATTCTTGCTCTATCATCAGTGTTTAGACATGGTGCTTCCCATGTATGTGCTTCATCAGCATTCCCCACAGTTGTTGATTGCCTAAAAAGTAGATTGAACGATGATAAGGTTCCTGTTCGTGAAACTGCAACAAAGGCTTTAGGATGTCTTCTCGTCTATCAGGCCCAATCTCACTATTCAGGGCCTTACAATTTTTCAGAGATTTTGCCTTTTCTGTCATCTTCTTTGCGTGATGATGCCAGTGATGTGCGCAGAAGAGCTTTAGGAGGCCTCAAGTCTGTTGCAAAGGTGAATGCTCTCACTGTTATTTCATACCTCCCTACCTTGGGACCAGCGATTGCAGAATGTCTGAGGGATGCAAGCACACCTGTACGACTTGCTGCAGAACGCTGTGCTCTGCATGTTTTCCAGCTAACAAAAGGCATGGAAAATGTCCAAGCTGCGCAAAAGTATATCACTGGTCTTGATGCTAGACGCATCGCAAAGCAGCCAGAACTAAGTGATTCAAGTGAAGATGATATGGTTGGCGCTTGATGTAAATACAAACTTTGTTTCCAATATTTTGTTTGTAATTTATTATTTTTGGGAATAGCGGCAACAGTTCATTTTCTCAAATGTGAGGGAAATAATAGCGGCTTTTGAGTGTTAAGCATCATTCATATAATAAAGTGCAATTTTGTTTTATATCACCGTTTATAACGTAAGCGTTAAGCATCATTCTTTGTCCCAAGCGAAA

Ace file of the UniGene sp_v1.1_unigene1618

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Translational activator GCN1, putative	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	75%
Blast2go	translational activator	-	-	83%

Source	InterPros	Term	Type	Identity
Blast2go	HEAT	IPR000357	-	83%
Blast2go	Armadillo-like helical	IPR011989	-	83%
Blast2go	Armadillo-type fold	IPR016024	-	83%
Blast2go	HEAT, type 2	IPR021133	-	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HI21

Fln msg: your sequence is shorter than subject: 856 - 1945

Fln protein: VTMGLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKAILEGGSDDEGASTEAQGRAIIDVLGKEKRNEVLAAVYMVRSDVSLTVRQAALHVWKTVVANTPKTLKEIMPVLMNTLITSLASASSERRQVAGRALGELVRKLGERVLPSIIPILAQGLQDSNGSRRQGVCIGLSEVMASAGKHQLVTFMGDLIPTIRTALCDSVSEVREAAGLAFSTLYKSAGMQAIDEIVPTLLHALEDEETSATALDGLKQILSVRTAAVLPHILPKLVHPPLSAFNAHALGALADVAGPGLDSHLGTVLPPLIEAMGNDDQEVATLAKKAAETVVMVIDEEGLYSLIAELVKSLGDTQASVRRGSAYLSGFFFKNSKLDLLDESPNLVTTLIVMLTDPDSATVQSSWEALGCVIGSLPKEILPTYVKVVRDAVSTARDKERRKRKGGPILIPGFCLPKALQPVLPVFLQGLMSGSAELREQAAEGLGELIDVTSENALKPFVVPITGPLIRIIGDRFPWQVKSAILSTLGILISKGGISLKPFLPQLQTTFIKCLQDNTRVVRSSSALALGKLSALSTRVDPLVNDLLSNLQVASEGGVKEAILVALQGVLKYAGKSVTASVISRVLVVLQDLVQSDDDQIRCSAARAMGIVSQYVEDTELASLLHALSVPASSESLAVRHGTILALSSVFRHGASHVCASSAFPTVVDCLKSRLNDDKVPVRETATKALGCLLVYQAQSHYSGPYNFSEILPFLSSSLRDDASDVRRRALGGLKSVAKVNALTVISYLPTLGPAIAECLRDASTPVRLAAERCALHVFQLTKGMENVQAAQKYITGLDARRIAKQPELSDSSEDDMVGA*

Protein Length: 857

Fln nts: AGTAACAATGGGACTTCCAGCTGTTGAAGATGGTATTTTCAATGATAATTGGCGCATTCGTCAGAGCTCTGTAGAACTTTTGGGTGATCTTCTTTTTAAGGTTGCAGGAACATCTGGAAAAGCAATTCTGGAGGGTGGAAGTGATGATGAAGGCGCAAGCACTGAAGCTCAGGGTCGTGCTATTATTGATGTTCTTGGAAAAGAAAAGCGTAATGAAGTTCTTGCAGCAGTTTATATGGTTCGATCTGATGTGAGCTTGACAGTGCGACAGGCTGCATTGCATGTTTGGAAGACTGTTGTTGCCAATACTCCTAAGACACTTAAGGAAATTATGCCAGTTTTAATGAATACCCTTATTACTTCATTGGCTTCAGCTTCATCAGAAAGACGACAGGTCGCAGGTAGGGCTCTTGGAGAGCTTGTTCGGAAACTGGGAGAAAGGGTGTTACCATCAATTATTCCAATATTGGCTCAGGGGCTGCAAGACTCAAATGGTAGTAGAAGACAAGGTGTATGCATTGGATTGAGTGAAGTGATGGCTAGTGCTGGAAAGCATCAACTTGTGACATTCATGGGTGATCTTATACCTACTATTCGAACAGCTCTTTGTGACAGTGTTTCAGAAGTGCGTGAAGCTGCGGGCCTGGCCTTCAGCACTCTGTACAAGAGTGCAGGAATGCAAGCAATAGATGAAATTGTTCCGACCCTTTTGCATGCTTTAGAAGATGAAGAAACTTCTGCCACTGCTCTGGATGGTCTGAAGCAAATACTTAGTGTCAGGACTGCAGCAGTTCTTCCACATATTTTACCAAAGCTGGTGCATCCGCCTCTGTCTGCCTTCAATGCTCATGCTCTTGGTGCATTAGCAGATGTTGCTGGGCCTGGTCTTGATTCTCATCTTGGAACTGTTTTACCACCTCTAATAGAAGCTATGGGTAATGATGATCAGGAGGTGGCAACTTTGGCTAAGAAAGCAGCAGAAACTGTTGTTATGGTTATTGATGAAGAAGGTCTTTACTCTTTGATAGCAGAGCTTGTAAAAAGCTTGGGAGACACTCAGGCTTCTGTTAGAAGGGGCTCTGCATACTTGTCAGGTTTTTTCTTTAAGAATAGTAAACTTGACTTACTTGATGAATCTCCGAACCTGGTGACAACACTGATTGTTATGTTGACAGATCCAGATTCTGCAACCGTTCAGTCTTCATGGGAGGCATTAGGATGTGTAATTGGTTCACTACCTAAAGAAATTCTTCCAACATATGTTAAAGTAGTCCGTGATGCAGTTTCAACAGCAAGAGATAAGGAACGGAGAAAGAGAAAAGGTGGACCTATACTAATTCCTGGTTTTTGTCTCCCCAAAGCTCTTCAGCCTGTTCTTCCTGTCTTTCTCCAAGGTCTGATGAGTGGTTCAGCTGAATTGAGAGAACAAGCAGCCGAAGGGCTAGGGGAGCTAATAGATGTGACCAGTGAAAATGCATTGAAGCCTTTTGTTGTTCCGATAACTGGGCCTCTTATACGAATAATAGGAGACAGGTTTCCATGGCAGGTCAAAAGTGCCATTTTATCTACTTTGGGTATCCTAATAAGCAAGGGTGGAATATCCCTCAAGCCTTTTCTTCCACAGCTTCAAACAACTTTTATCAAGTGCTTGCAGGACAATACAAGGGTTGTGCGTTCAAGTTCAGCACTGGCACTGGGGAAGCTTAGTGCTCTAAGCACCCGGGTTGATCCTTTAGTTAATGATCTCCTTTCAAATTTGCAGGTGGCATCTGAGGGTGGAGTTAAAGAGGCTATTCTGGTTGCTCTTCAGGGAGTCTTGAAGTATGCTGGAAAAAGTGTCACTGCTTCTGTAATAAGTCGTGTCCTCGTTGTGCTCCAGGATCTTGTACAATCTGATGATGATCAAATCAGGTGTTCAGCTGCAAGAGCAATGGGTATAGTTTCCCAGTATGTGGAAGATACAGAACTTGCTAGCTTATTGCACGCACTGTCAGTCCCAGCGTCATCGGAGTCTCTGGCTGTTCGGCATGGAACAATTCTTGCTCTATCATCAGTGTTTAGACATGGTGCTTCCCATGTATGTGCTTCATCAGCATTCCCCACAGTTGTTGATTGCCTAAAAAGTAGATTGAACGATGATAAGGTTCCTGTTCGTGAAACTGCAACAAAGGCTTTAGGATGTCTTCTCGTCTATCAGGCCCAATCTCACTATTCAGGGCCTTACAATTTTTCAGAGATTTTGCCTTTTCTGTCATCTTCTTTGCGTGATGATGCCAGTGATGTGCGCAGAAGAGCTTTAGGAGGCCTCAAGTCTGTTGCAAAGGTGAATGCTCTCACTGTTATTTCATACCTCCCTACCTTGGGACCAGCGATTGCAGAATGTCTGAGGGATGCAAGCACACCTGTACGACTTGCTGCAGAACGCTGTGCTCTGCATGTTTTCCAGCTAACAAAAGGCATGGAAAATGTCCAAGCTGCGCAAAAGTATATCACTGGTCTTGATGCTAGACGCATCGCAAAGCAGCCAGAACTAAGTGATTCAAGTGAAGATGATATGGTTGGCGCTTGA___TGTAAATACAAACTTTGTTTCCAATATTTTGTTTGTAATTTATTATTTTTGGGAATAGCGGCAACAGTTCATTTTCTCAAATGTGAGGGAAATAATAGCGGCTTTTGAGTGTTAAGCATCATTCATATAATAAAGTGCAATTTTGTTTTATATCACCGTTTATAACGTAAGCGTTAAGCATCATTCTTTGTCCCAAGCGAAA

Fln Alignment:

sp_v1.1_unigene1618___LPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKAILEGGSDDEGASTEAQGRAIIDVLGKEKRNEVLAAVYMVRSDVSLTVRQAALHVWKTVVANTPKTLKEIMPVLMNTLITSLASASSERRQVAGRALGELVRKLGERVLPSIIPILAQGLQDSNGSRRQGVCIGLSEVMASAGKHQLVTFMGDLIPTIRTALCDSVSEVREAAGLAFSTLYKSAGMQAIDEIVPTLLHALEDEETSATALDGLKQILSVRTAAVLPHILPKLVHPPLSAFNAHALGALADVAGPGLDSHLGTVLPPLIEAMGNDDQEVATLAKKAAETVVMVIDEEGLYSLIAELVKSLGDTQASVRRGSAYLSGFFFKNSKLDLLDESPNLVTTLIVMLTDPDSATVQSSWEALGCVIGSLPKEILPTYVKVVRDAVSTARDKERRKRKGGPILIPGFCLPKALQPVLPVFLQGLMSGSAELREQAAEGLGELIDVTSENALKPFVVPITGPLIRIIGDRFPWQVKSAILSTLGILISKGGISLKPFLPQLQTTFIKCLQDNTRVVRXXXXXXXXXXXXXXTRVDPLVNDLLSNLQVASEGGVKEAILVALQGVLKYAGKSVTASVISRXXXXXXXXXXXXXXXIRCSAARAMGIVSQYVEDTELASLLHALSVPASSESLAVRHGTILALSSVFRHGASHVCASSAFPTVVDCLKSRLNDDKVPVRETATKALGCLLVYQAQSHYSGPYNFSEILPFLSSSLRDDASDVRRRALGGLKSVAKVNALTVISYLPTLGPAIAECLRDASTPVRLAAERCALHVFQLTKGMENVQAAQKYITGLDARRIAKQPELSDSSEDD
F6HI21______________LPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEGLGRDKRNEVLAALYMVRADVSISVRQAALHVWKTIVANTPKTLREIMPVLMNTLITSLASSSSERRQVAGRSLGELVRKLGERVLPLIIPILAQGLKDPKTSRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSTPEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHSLEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLTAFNAHALGALAEVAGPGLNFHLGIVLPALLSAMSDDDTDVQKLAKKAAETVVLVIDEEGVEGLISELLKGVGDNQASIRRSSSFLIGYFFKNSKLYLVDEAPNMITTLIVLLSDSDSATVAVAWEALSRVTNSVPKEVLPSYIKIVRDAVSTSRDKERRKKKGGPVLIPGFCLPKALQPLLPVFLQGLISGSAELREQAAQGLGELIEVTSEQALKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDNTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQV-SDGGVREAILTALKGVLQHAGKSVSVAVRTRVYVLLKDFVHHDDDQVRNSAASILGILSQYMEDGQLSDLLQELSSLDSSLSWSARHGSILTISSMLRHSPSSICTSPVFPSVVYCLKDNLKDEKFPVRETSTKALGRLLLHRVQSDPSNTAAHLDVLSPMVSALQDDSSEVRRRALSALKAVAKANPSALMTHITIFGPALAECLKDGNTPVRLAAERCALHAFQLTKGTENVQAAQKFITGLDARRLSKFPEHSDDSEDN

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
1661		66	33		0.997452
1662	66		33		0.997452
1684	25			75	0.996473
1686		75	25		0.996473
1687	75		25		0.996473
1688	75		25		0.996473
1729		75		25	0.996473
1848		20		80	0.995493
1898	12	87			0.992554
1900	87	12			0.992554
1952		14		85	0.993533
2084	11	88			0.923564
2123	20			80	0.995493
2168	83			16	0.994512
2169		83	16		0.994512
2170			16	16	0.988813
2171			16	83	0.994512
2585	88			11	0.999952
2590	86	13			0.999973
2592	14	85			0.999981
2593		15		84	0.999986
2596			83	16	0.999991
2597			18	81	0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain