SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1605

Length: 1513 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1605

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ARF-like GTPase n=1 Tax=Selaginella moellendorffii RepID=D8R3K8_SELML	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	arf-like gtpase	-	-	91%

Source	InterPros	Term	Type	Identity
Blast2go	Small GTPase superfamily, Rab type	IPR003579	-	91%
Blast2go	Small GTP-binding protein domain	IPR005225	-	91%
Blast2go	Small GTPase superfamily, SAR1-type	IPR006687	-	91%
Blast2go	ADP-ribosylation factor	IPR006688	-	91%
Blast2go	Small GTPase superfamily, ARF/SAR type	IPR006689	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPS8

Fln msg:

Fln protein: MGALMSRLWFMLFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVVTHPTVGSNVEELVYKNIRFEVWDLGGQDRLRASWATYYRGTHAVVVVIDSTDRARIAIIKDELFKLLQHEDLEHAVLLVFANKQDLKDAMTPAEISDALSLHTIKNHDWHIQACCALTGEGLYDGLGWIAQRVTGSN*

Protein Length: 183

Fln nts: GGCATTCAGAAACTAAGATGTGTATTGCGTGCTAGAGTTTTGCCTTTGGATTGACAACCTCCGATTACGTGCAATTGGACAGTCAACCATCACGGCTTGAGCTTAAGGCCCGCGCATCCGAATGACGGAGCAAGCTTTTGGGTGAGTGGAAAAGTCCAAAACGAGGGCTCATCGATTGGAGAGGCCGAACAATACGAATAAAAAATAAGATTTACATGTTCGGCTGGAACTCTTGTCCTCTTCTTTCTTTTAGCGGGTCATTTAACAGACCATCGGTTAAAGGGTTTTAAACATAAATAATCCTCAGATCTAGGAATAGACGATCTGATCATGCCATATGGTCTAAAGGTCCTTTTGATGACATTTAAAAAGACCCCAGTTCGAGTTTTTGCTTGAGCGTTTGATGTTAGGGATGTTGGGTGTAACCCTAGACCACCCAAATATCTCTTTCAGTCGGGGTTTGTTATAGATATAGCTCAGCAGGAAGCCTGTTCGAATCGCGGATCTGGTTGATTTTTGGGTTGGAATTAAGGCTGCAGATTTCAATTACTTAATTGGAGGGTTCAAAATTTAAGCCGTAATCGCGGACAGTGTTGGGTTTGATTAGTTTGAA_-_ATGGGGGCCTTGATGTCTAGGTTATGGTTTATGCTGTTCCCAGCCAAAGAGTATAAAATTGTGGTCGTAGGTCTCGATAATGCCGGAAAGACGACGACTCTGTATAAGTTACACCTTGGAGAAGTGGTGGTCACGCATCCTACAGTGGGGAGTAATGTTGAAGAGCTTGTCTATAAAAATATAAGGTTCGAGGTGTGGGATTTAGGTGGTCAAGATCGTCTTCGAGCTTCATGGGCAACATATTATCGAGGCACACATGCTGTTGTGGTAGTTATTGACAGTACAGATAGAGCGAGGATTGCTATAATCAAAGATGAGCTTTTCAAACTCTTACAACATGAGGATCTTGAACATGCTGTTTTGCTAGTCTTTGCCAATAAACAAGATCTTAAAGATGCCATGACACCTGCAGAGATTAGTGATGCTTTATCTTTACACACCATAAAAAATCATGATTGGCACATACAAGCTTGTTGTGCTTTAACAGGGGAAGGACTATACGATGGCCTGGGCTGGATTGCGCAACGTGTAACTGGATCAAATTGA___CGAGTATTGGAATTAGAATTATCATTTTGTATCAAAGATGTTTCCTGATTTCTTGGGTTTCTAATTTGCAAAAAAAGTATTTGTAATTTTTTAAAGCAACCTTTTTGTTTGAGCTGGTTTTTGCATTGCACTCGAATAAATTAAGAGTTGGATGTTGAACGCTCTACTGTGATTACTAGGTGCCTTTTATTTGGAAAACATGCCGTCTATTTGTATTGGGAATTTAAAAATTGATTTTGGGTAATTTTGTCAAAATTTCATAGAAGTTTATCAGAATCTGTTCACATGTGAATTTAAGTGCATCAACTGTATTGATCTTTGAAGTAAATCTTAATACAACTTTCTGTGCTTCCG

Fln Alignment:

sp_v1.1_unigene1605___MGALMSRLWFMLFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVVTHPTVGSNVEELVYKNIRFEVWDLGGQDRLRASWATYYRGTHAVVVVIDSTDRARIAIIKDELFKLLQHEDLEHAVLLVFANKQDLKDAMTPAEISDALSLHTIKNHDWHIQACCALTGEGLYDGLGWIAQRV
B8LPS8______________MGLTFTKLFQRMFAKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVAEARDELHRMLNEDELRDAVLLVFANKQDLPNAMTAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
53			28	71	1.0
110		57		42	1.0
276			85	14	0.993533
284			83	16	0.994512
314			88	11	0.923564
316	88		11		0.923564
317	88		11		0.923564
338			11	88	0.923564
380	14		85		0.993533
390	10			90	0.90298
391		10		90	0.90298
392	10		90		0.90298
394			10	90	0.90298
417		12		87	0.992554
455			11	88	0.923564
456		88	11		0.923564
962		4		95	0.997494
1030		5		94	0.998578
1187		10		90	0.999898
1219		21		78	1.0
1404	88		11		0.923564
1428		16		83	0.994512
1431	16			83	0.994512
1432	16	83			0.994512
1434	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain